miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 11735 0.72 0.435617
Target:  5'- gGCGa-GuCGGCCGUCAUCGACG-GGCc -3'
miRNA:   3'- aCGCggC-GCCGGCAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 235295 0.72 0.452526
Target:  5'- cGCGCCgGCuGCCGUCACCGuCGcuGCu -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCuGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 104017 0.72 0.452526
Target:  5'- -aCGCCGgGGUCGUCGgCGggcaGCGUGACc -3'
miRNA:   3'- acGCGGCgCCGGCAGUgGC----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 142357 0.72 0.452526
Target:  5'- gGcCGCCGCGGCCGcCGCCGccuccuccaACGUaGCc -3'
miRNA:   3'- aC-GCGGCGCCGGCaGUGGC---------UGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 53154 0.71 0.523445
Target:  5'- gGCGCguaacaguacaCGCGGCCGcccUCGCCGAUGaagaUGGCc -3'
miRNA:   3'- aCGCG-----------GCGCCGGC---AGUGGCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 178507 0.71 0.487378
Target:  5'- aUGCGUCGCGGUaccuCGUCGCCcauccgguaGACG-GGCa -3'
miRNA:   3'- -ACGCGGCGCCG----GCAGUGG---------CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 95098 0.71 0.487378
Target:  5'- gGCGCCuugaGCGGCCG-CGCgCGcuugaGCGUGGCc -3'
miRNA:   3'- aCGCGG----CGCCGGCaGUG-GC-----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 183435 0.71 0.478543
Target:  5'- gGCGCUGUGGCgCGagAUCGACGcccUGGCg -3'
miRNA:   3'- aCGCGGCGCCG-GCagUGGCUGC---ACUG- -5'
14503 5' -61.6 NC_003521.1 + 187653 0.71 0.501671
Target:  5'- gGCGUCGCcgaccuccucgccGCCGUCcCCGACGUGGu -3'
miRNA:   3'- aCGCGGCGc------------CGGCAGuGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 165184 0.71 0.504372
Target:  5'- cUGCGCCGCuguuGCCGUCgucaucgucggcgACUGAgcCGUGGCg -3'
miRNA:   3'- -ACGCGGCGc---CGGCAG-------------UGGCU--GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 161207 0.71 0.478543
Target:  5'- gGCGCCGCGGUCGcC-CCGGCaaguucgaUGGCg -3'
miRNA:   3'- aCGCGGCGCCGGCaGuGGCUGc-------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 43478 0.71 0.478543
Target:  5'- aGCGCgGCGGCCGU-GCUGGcCGcGGCg -3'
miRNA:   3'- aCGCGgCGCCGGCAgUGGCU-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 68720 0.71 0.478543
Target:  5'- gGCGCCGuCGGCCG-C-CCGcACG-GACu -3'
miRNA:   3'- aCGCGGC-GCCGGCaGuGGC-UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 184621 0.71 0.478543
Target:  5'- cGUGCgUGCGguacagaccugcGCCGUCACCGGCuuGUGACc -3'
miRNA:   3'- aCGCG-GCGC------------CGGCAGUGGCUG--CACUG- -5'
14503 5' -61.6 NC_003521.1 + 59716 0.71 0.487378
Target:  5'- cGCGCCGUGGCCGa-GCUGGUG-GACa -3'
miRNA:   3'- aCGCGGCGCCGGCagUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 164481 0.71 0.487378
Target:  5'- cGcCGCCGCaGCCGUCACCGuCGc--- -3'
miRNA:   3'- aC-GCGGCGcCGGCAGUGGCuGCacug -5'
14503 5' -61.6 NC_003521.1 + 195405 0.71 0.487378
Target:  5'- cGCGCCGaCGGCgGgCACCGGCuaccugGUGAa -3'
miRNA:   3'- aCGCGGC-GCCGgCaGUGGCUG------CACUg -5'
14503 5' -61.6 NC_003521.1 + 137240 0.71 0.523445
Target:  5'- cGCGCaC-CGGCCGggGCCGACGgcGGCa -3'
miRNA:   3'- aCGCG-GcGCCGGCagUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 156200 0.71 0.523445
Target:  5'- cUGCaugGCCGaggacgaccUGGCCGUCACCGACGccGAg -3'
miRNA:   3'- -ACG---CGGC---------GCCGGCAGUGGCUGCa-CUg -5'
14503 5' -61.6 NC_003521.1 + 98470 0.71 0.505273
Target:  5'- gGCgGCgGCGGCCG-CGgCGGcCGUGGCg -3'
miRNA:   3'- aCG-CGgCGCCGGCaGUgGCU-GCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.