miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 178507 0.71 0.487378
Target:  5'- aUGCGUCGCGGUaccuCGUCGCCcauccgguaGACG-GGCa -3'
miRNA:   3'- -ACGCGGCGCCG----GCAGUGG---------CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 108344 0.71 0.505273
Target:  5'- cGCGCCGaCGGCgGUCuCCGAa--GACg -3'
miRNA:   3'- aCGCGGC-GCCGgCAGuGGCUgcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 183435 0.71 0.478543
Target:  5'- gGCGCUGUGGCgCGagAUCGACGcccUGGCg -3'
miRNA:   3'- aCGCGGCGCCG-GCagUGGCUGC---ACUG- -5'
14503 5' -61.6 NC_003521.1 + 150977 0.7 0.560491
Target:  5'- gGCGCUgGCGGCCGaCAUCGGCuacGGCg -3'
miRNA:   3'- aCGCGG-CGCCGGCaGUGGCUGca-CUG- -5'
14503 5' -61.6 NC_003521.1 + 141362 0.7 0.579291
Target:  5'- gGUGCgGCGGCgGUCGgUGACGcggugcccgaUGACg -3'
miRNA:   3'- aCGCGgCGCCGgCAGUgGCUGC----------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 155719 0.7 0.579291
Target:  5'- -cCGCCGCuGCCGcCGCCGAUGgggGAg -3'
miRNA:   3'- acGCGGCGcCGGCaGUGGCUGCa--CUg -5'
14503 5' -61.6 NC_003521.1 + 131352 0.7 0.583068
Target:  5'- cGUGCCgucgcaagcucaucgGCGGCauggaGuUCGCCGAgGUGACg -3'
miRNA:   3'- aCGCGG---------------CGCCGg----C-AGUGGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 86590 0.7 0.569871
Target:  5'- -aCGCCGCaGCCGgggaagaagCGCuCGugGUGGCg -3'
miRNA:   3'- acGCGGCGcCGGCa--------GUG-GCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 201666 0.7 0.560491
Target:  5'- cUGgGCCGCGaGCUG-CGCCGcCgGUGGCa -3'
miRNA:   3'- -ACgCGGCGC-CGGCaGUGGCuG-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 239241 0.7 0.560491
Target:  5'- gGCGCUGCacGGCCGUCAgcagcgaCGGCGggugUGGCg -3'
miRNA:   3'- aCGCGGCG--CCGGCAGUg------GCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 117252 0.7 0.580234
Target:  5'- gGCGCCGCcgccaucccgccaccGCCGUCgucgGCCGugGUGcCg -3'
miRNA:   3'- aCGCGGCGc--------------CGGCAG----UGGCugCACuG- -5'
14503 5' -61.6 NC_003521.1 + 77515 0.7 0.547431
Target:  5'- cGCGCCGCugaccguggacacGCCGUCGCaacugGACGUGGu -3'
miRNA:   3'- aCGCGGCGc------------CGGCAGUGg----CUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 210889 0.7 0.541863
Target:  5'- cGuCGCCucgGUGGCCGUCGCCaGGCccuUGACg -3'
miRNA:   3'- aC-GCGG---CGCCGGCAGUGG-CUGc--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 102333 0.7 0.541863
Target:  5'- gUGCGCgUGgGcGCCGaCGCCGGgGUGGCg -3'
miRNA:   3'- -ACGCG-GCgC-CGGCaGUGGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 196691 0.7 0.536314
Target:  5'- gGCGUCGgaggaggagcagcgaCGGCCGacuUCACCGGCGgcGACg -3'
miRNA:   3'- aCGCGGC---------------GCCGGC---AGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 140456 0.7 0.532626
Target:  5'- cGUGCCGUccCCGUCACCcguccGCGUGGCu -3'
miRNA:   3'- aCGCGGCGccGGCAGUGGc----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 85654 0.7 0.532626
Target:  5'- gGCaGCCGCGGCCGcCagcuguuccgaGCCGGCGUccaGCa -3'
miRNA:   3'- aCG-CGGCGCCGGCaG-----------UGGCUGCAc--UG- -5'
14503 5' -61.6 NC_003521.1 + 65718 0.7 0.541863
Target:  5'- gGCGCCGCggcggcccuGGCCGgcaaaaagggCAUCGACGcuagGACg -3'
miRNA:   3'- aCGCGGCG---------CCGGCa---------GUGGCUGCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 149237 0.7 0.551153
Target:  5'- cUGCGgCGCGGCUacuaCGCCuacGACGUGGCc -3'
miRNA:   3'- -ACGCgGCGCCGGca--GUGG---CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 74182 0.7 0.551153
Target:  5'- cUGCGCCGCGGCgccCGgCGCgCGGCccGACg -3'
miRNA:   3'- -ACGCGGCGCCG---GCaGUG-GCUGcaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.