miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 127278 0.7 0.532626
Target:  5'- cGCGCUgGUGGUCGUC-CCGGCGcGAg -3'
miRNA:   3'- aCGCGG-CGCCGGCAGuGGCUGCaCUg -5'
14503 5' -61.6 NC_003521.1 + 191253 0.7 0.541863
Target:  5'- gGCGCCGCGGCC--CACgCGGCagGUGGu -3'
miRNA:   3'- aCGCGGCGCCGGcaGUG-GCUG--CACUg -5'
14503 5' -61.6 NC_003521.1 + 208522 0.7 0.551153
Target:  5'- gUGCGCCGCaGCUGUCuggcccauucgGCCGAgGUcACg -3'
miRNA:   3'- -ACGCGGCGcCGGCAG-----------UGGCUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 218233 0.7 0.551153
Target:  5'- gGCGaCCGCaggGGCCGUCACgGGUGcGACg -3'
miRNA:   3'- aCGC-GGCG---CCGGCAGUGgCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 135899 0.7 0.569871
Target:  5'- gGCGUCGCGcucGUCGUCAUCGuCGUcgGACg -3'
miRNA:   3'- aCGCGGCGC---CGGCAGUGGCuGCA--CUG- -5'
14503 5' -61.6 NC_003521.1 + 140867 0.7 0.560491
Target:  5'- -aCGCUGCuGGCCaUCAUCGACGaGACg -3'
miRNA:   3'- acGCGGCG-CCGGcAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 117492 0.7 0.532626
Target:  5'- gGCGCUGgGGCCGUCGgUGuuCG-GACg -3'
miRNA:   3'- aCGCGGCgCCGGCAGUgGCu-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 1439 0.7 0.560491
Target:  5'- cUGgGCCGCGaGCUG-CGCCGcCgGUGGCa -3'
miRNA:   3'- -ACgCGGCGC-CGGCaGUGGCuG-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 200342 0.7 0.560491
Target:  5'- gGCGCCGUGGCg--CGCCG-CG-GACa -3'
miRNA:   3'- aCGCGGCGCCGgcaGUGGCuGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 6707 0.7 0.569871
Target:  5'- aGCGCUGCugGGUC-UCGCCGugGUG-Ca -3'
miRNA:   3'- aCGCGGCG--CCGGcAGUGGCugCACuG- -5'
14503 5' -61.6 NC_003521.1 + 39013 0.7 0.560491
Target:  5'- gGCGCUGCacGGCCGUCAgcagcgaCGGCGggugUGGCg -3'
miRNA:   3'- aCGCGGCG--CCGGCAGUg------GCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 201666 0.7 0.560491
Target:  5'- cUGgGCCGCGaGCUG-CGCCGcCgGUGGCa -3'
miRNA:   3'- -ACgCGGCGC-CGGCaGUGGCuG-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 87255 0.7 0.532626
Target:  5'- gGUGgaGCGGCUGUgCGCCGugcGCGUGGCc -3'
miRNA:   3'- aCGCggCGCCGGCA-GUGGC---UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 86590 0.7 0.569871
Target:  5'- -aCGCCGCaGCCGgggaagaagCGCuCGugGUGGCg -3'
miRNA:   3'- acGCGGCGcCGGCa--------GUG-GCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 141362 0.7 0.579291
Target:  5'- gGUGCgGCGGCgGUCGgUGACGcggugcccgaUGACg -3'
miRNA:   3'- aCGCGgCGCCGgCAGUgGCUGC----------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 155719 0.7 0.579291
Target:  5'- -cCGCCGCuGCCGcCGCCGAUGgggGAg -3'
miRNA:   3'- acGCGGCGcCGGCaGUGGCUGCa--CUg -5'
14503 5' -61.6 NC_003521.1 + 117252 0.7 0.580234
Target:  5'- gGCGCCGCcgccaucccgccaccGCCGUCgucgGCCGugGUGcCg -3'
miRNA:   3'- aCGCGGCGc--------------CGGCAG----UGGCugCACuG- -5'
14503 5' -61.6 NC_003521.1 + 131352 0.7 0.583068
Target:  5'- cGUGCCgucgcaagcucaucgGCGGCauggaGuUCGCCGAgGUGACg -3'
miRNA:   3'- aCGCGG---------------CGCCGg----C-AGUGGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 139209 0.7 0.560491
Target:  5'- aGCGCCG-GGCCcUgGCCGACGUc-- -3'
miRNA:   3'- aCGCGGCgCCGGcAgUGGCUGCAcug -5'
14503 5' -61.6 NC_003521.1 + 161142 0.7 0.569871
Target:  5'- cGCgGCCGCgGGCgGUCGCgGACGUc-- -3'
miRNA:   3'- aCG-CGGCG-CCGgCAGUGgCUGCAcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.