Results 61 - 80 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 212847 | 0.72 | 0.461114 |
Target: 5'- cUGcCGCCGUGGCCGUgagCGCCG-CcUGGCg -3' miRNA: 3'- -AC-GCGGCGCCGGCA---GUGGCuGcACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 127783 | 0.72 | 0.469787 |
Target: 5'- cGgGCgGCGGCCGUaGCCGcACGUG-Cu -3' miRNA: 3'- aCgCGgCGCCGGCAgUGGC-UGCACuG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 49589 | 0.72 | 0.469787 |
Target: 5'- aGUGCCGaggaaGG-CGUCACCGGCGcugggGACg -3' miRNA: 3'- aCGCGGCg----CCgGCAGUGGCUGCa----CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 89961 | 0.72 | 0.469787 |
Target: 5'- cGCGUCucugGCGGCCGUUcgggguucaACCGGCGggUGGCg -3' miRNA: 3'- aCGCGG----CGCCGGCAG---------UGGCUGC--ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 161207 | 0.71 | 0.478543 |
Target: 5'- gGCGCCGCGGUCGcC-CCGGCaaguucgaUGGCg -3' miRNA: 3'- aCGCGGCGCCGGCaGuGGCUGc-------ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 183435 | 0.71 | 0.478543 |
Target: 5'- gGCGCUGUGGCgCGagAUCGACGcccUGGCg -3' miRNA: 3'- aCGCGGCGCCG-GCagUGGCUGC---ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 43478 | 0.71 | 0.478543 |
Target: 5'- aGCGCgGCGGCCGU-GCUGGcCGcGGCg -3' miRNA: 3'- aCGCGgCGCCGGCAgUGGCU-GCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 68720 | 0.71 | 0.478543 |
Target: 5'- gGCGCCGuCGGCCG-C-CCGcACG-GACu -3' miRNA: 3'- aCGCGGC-GCCGGCaGuGGC-UGCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 184621 | 0.71 | 0.478543 |
Target: 5'- cGUGCgUGCGguacagaccugcGCCGUCACCGGCuuGUGACc -3' miRNA: 3'- aCGCG-GCGC------------CGGCAGUGGCUG--CACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 59716 | 0.71 | 0.487378 |
Target: 5'- cGCGCCGUGGCCGa-GCUGGUG-GACa -3' miRNA: 3'- aCGCGGCGCCGGCagUGGCUGCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 195405 | 0.71 | 0.487378 |
Target: 5'- cGCGCCGaCGGCgGgCACCGGCuaccugGUGAa -3' miRNA: 3'- aCGCGGC-GCCGgCaGUGGCUG------CACUg -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 95098 | 0.71 | 0.487378 |
Target: 5'- gGCGCCuugaGCGGCCG-CGCgCGcuugaGCGUGGCc -3' miRNA: 3'- aCGCGG----CGCCGGCaGUG-GC-----UGCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 178507 | 0.71 | 0.487378 |
Target: 5'- aUGCGUCGCGGUaccuCGUCGCCcauccgguaGACG-GGCa -3' miRNA: 3'- -ACGCGGCGCCG----GCAGUGG---------CUGCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 164481 | 0.71 | 0.487378 |
Target: 5'- cGcCGCCGCaGCCGUCACCGuCGc--- -3' miRNA: 3'- aC-GCGGCGcCGGCAGUGGCuGCacug -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 187653 | 0.71 | 0.501671 |
Target: 5'- gGCGUCGCcgaccuccucgccGCCGUCcCCGACGUGGu -3' miRNA: 3'- aCGCGGCGc------------CGGCAGuGGCUGCACUg -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 165184 | 0.71 | 0.504372 |
Target: 5'- cUGCGCCGCuguuGCCGUCgucaucgucggcgACUGAgcCGUGGCg -3' miRNA: 3'- -ACGCGGCGc---CGGCAG-------------UGGCU--GCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 98470 | 0.71 | 0.505273 |
Target: 5'- gGCgGCgGCGGCCG-CGgCGGcCGUGGCg -3' miRNA: 3'- aCG-CGgCGCCGGCaGUgGCU-GCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 110533 | 0.71 | 0.505273 |
Target: 5'- gGCGCCGCGGCC-UCGCCcAgGUaGCc -3' miRNA: 3'- aCGCGGCGCCGGcAGUGGcUgCAcUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 108344 | 0.71 | 0.505273 |
Target: 5'- cGCGCCGaCGGCgGUCuCCGAa--GACg -3' miRNA: 3'- aCGCGGC-GCCGgCAGuGGCUgcaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 96651 | 0.71 | 0.505273 |
Target: 5'- cGCGCgGCaGGCgG-CGCCGGCGUG-Cu -3' miRNA: 3'- aCGCGgCG-CCGgCaGUGGCUGCACuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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