miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 53154 0.71 0.523445
Target:  5'- gGCGCguaacaguacaCGCGGCCGcccUCGCCGAUGaagaUGGCc -3'
miRNA:   3'- aCGCG-----------GCGCCGGC---AGUGGCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 156200 0.71 0.523445
Target:  5'- cUGCaugGCCGaggacgaccUGGCCGUCACCGACGccGAg -3'
miRNA:   3'- -ACG---CGGC---------GCCGGCAGUGGCUGCa-CUg -5'
14503 5' -61.6 NC_003521.1 + 137240 0.71 0.523445
Target:  5'- cGCGCaC-CGGCCGggGCCGACGgcGGCa -3'
miRNA:   3'- aCGCG-GcGCCGGCagUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 140456 0.7 0.532626
Target:  5'- cGUGCCGUccCCGUCACCcguccGCGUGGCu -3'
miRNA:   3'- aCGCGGCGccGGCAGUGGc----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 127278 0.7 0.532626
Target:  5'- cGCGCUgGUGGUCGUC-CCGGCGcGAg -3'
miRNA:   3'- aCGCGG-CGCCGGCAGuGGCUGCaCUg -5'
14503 5' -61.6 NC_003521.1 + 74219 0.7 0.532626
Target:  5'- aGCaGCaGCaGGCCGUCGgCGcCGUGACg -3'
miRNA:   3'- aCG-CGgCG-CCGGCAGUgGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 43341 0.7 0.532626
Target:  5'- cGCGCCGUccGGCC--CGCCGcGCGUGAa -3'
miRNA:   3'- aCGCGGCG--CCGGcaGUGGC-UGCACUg -5'
14503 5' -61.6 NC_003521.1 + 117492 0.7 0.532626
Target:  5'- gGCGCUGgGGCCGUCGgUGuuCG-GACg -3'
miRNA:   3'- aCGCGGCgCCGGCAGUgGCu-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 87255 0.7 0.532626
Target:  5'- gGUGgaGCGGCUGUgCGCCGugcGCGUGGCc -3'
miRNA:   3'- aCGCggCGCCGGCA-GUGGC---UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 152157 0.7 0.532626
Target:  5'- cGgGCCGcCGGCC--CACCGACcUGGCg -3'
miRNA:   3'- aCgCGGC-GCCGGcaGUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 85654 0.7 0.532626
Target:  5'- gGCaGCCGCGGCCGcCagcuguuccgaGCCGGCGUccaGCa -3'
miRNA:   3'- aCG-CGGCGCCGGCaG-----------UGGCUGCAc--UG- -5'
14503 5' -61.6 NC_003521.1 + 196691 0.7 0.536314
Target:  5'- gGCGUCGgaggaggagcagcgaCGGCCGacuUCACCGGCGgcGACg -3'
miRNA:   3'- aCGCGGC---------------GCCGGC---AGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 65718 0.7 0.541863
Target:  5'- gGCGCCGCggcggcccuGGCCGgcaaaaagggCAUCGACGcuagGACg -3'
miRNA:   3'- aCGCGGCG---------CCGGCa---------GUGGCUGCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 102333 0.7 0.541863
Target:  5'- gUGCGCgUGgGcGCCGaCGCCGGgGUGGCg -3'
miRNA:   3'- -ACGCG-GCgC-CGGCaGUGGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 210889 0.7 0.541863
Target:  5'- cGuCGCCucgGUGGCCGUCGCCaGGCccuUGACg -3'
miRNA:   3'- aC-GCGG---CGCCGGCAGUGG-CUGc--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 191253 0.7 0.541863
Target:  5'- gGCGCCGCGGCC--CACgCGGCagGUGGu -3'
miRNA:   3'- aCGCGGCGCCGGcaGUG-GCUG--CACUg -5'
14503 5' -61.6 NC_003521.1 + 77515 0.7 0.547431
Target:  5'- cGCGCCGCugaccguggacacGCCGUCGCaacugGACGUGGu -3'
miRNA:   3'- aCGCGGCGc------------CGGCAGUGg----CUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 74182 0.7 0.551153
Target:  5'- cUGCGCCGCGGCgccCGgCGCgCGGCccGACg -3'
miRNA:   3'- -ACGCGGCGCCG---GCaGUG-GCUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 149237 0.7 0.551153
Target:  5'- cUGCGgCGCGGCUacuaCGCCuacGACGUGGCc -3'
miRNA:   3'- -ACGCgGCGCCGGca--GUGG---CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 208522 0.7 0.551153
Target:  5'- gUGCGCCGCaGCUGUCuggcccauucgGCCGAgGUcACg -3'
miRNA:   3'- -ACGCGGCGcCGGCAG-----------UGGCUgCAcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.