miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 112031 0.66 0.775016
Target:  5'- cGCGCCugguggaGGCCGcCACCGACa---- -3'
miRNA:   3'- aCGCGGcg-----CCGGCaGUGGCUGcacug -5'
14503 5' -61.6 NC_003521.1 + 37007 0.66 0.775016
Target:  5'- gGCGUCGCGGCggaGUCaggACCGACa---- -3'
miRNA:   3'- aCGCGGCGCCGg--CAG---UGGCUGcacug -5'
14503 5' -61.6 NC_003521.1 + 123965 0.66 0.775016
Target:  5'- cUGCGCgCGCaGGUCGUCGCgGuCGgcGGCc -3'
miRNA:   3'- -ACGCG-GCG-CCGGCAGUGgCuGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 196880 0.66 0.775016
Target:  5'- aGCaGCCGcCGGUgauCGUCGCCGAagaGgucggGACg -3'
miRNA:   3'- aCG-CGGC-GCCG---GCAGUGGCUg--Ca----CUG- -5'
14503 5' -61.6 NC_003521.1 + 183793 0.66 0.775016
Target:  5'- aGUGCCuggGCGGCgUGuUCAUCcGCGUGGCg -3'
miRNA:   3'- aCGCGG---CGCCG-GC-AGUGGcUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 124141 0.66 0.775016
Target:  5'- cGCGCCGCugccuccGCCGcCGCUGcCGUG-Ca -3'
miRNA:   3'- aCGCGGCGc------CGGCaGUGGCuGCACuG- -5'
14503 5' -61.6 NC_003521.1 + 88054 0.66 0.775016
Target:  5'- cGCGCggaugagguCGCGGUgGUCGgCGGCGcccgUGACc -3'
miRNA:   3'- aCGCG---------GCGCCGgCAGUgGCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 98148 0.66 0.775016
Target:  5'- aGCuGCUGCcGCCGUCGCUG-C-UGACg -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGGCuGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 111553 0.66 0.774146
Target:  5'- gGCGCCucuaccucgagguGCGGCUGa-GCCGGCGgguuccgGACu -3'
miRNA:   3'- aCGCGG-------------CGCCGGCagUGGCUGCa------CUG- -5'
14503 5' -61.6 NC_003521.1 + 17800 0.66 0.766268
Target:  5'- gGCG-UGCuGGCCGUgCgACCGGCG-GACg -3'
miRNA:   3'- aCGCgGCG-CCGGCA-G-UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 18132 0.66 0.766268
Target:  5'- -aCGCC-CGGCCG-CACCGAgGUcGAg -3'
miRNA:   3'- acGCGGcGCCGGCaGUGGCUgCA-CUg -5'
14503 5' -61.6 NC_003521.1 + 100705 0.66 0.766267
Target:  5'- gGCGCCGCcGCgGcCGCUGAUGgaggaGGCg -3'
miRNA:   3'- aCGCGGCGcCGgCaGUGGCUGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 102794 0.66 0.766267
Target:  5'- cGCGCCgGCGGCCGcCAgcuCgGGCGgcaGCa -3'
miRNA:   3'- aCGCGG-CGCCGGCaGU---GgCUGCac-UG- -5'
14503 5' -61.6 NC_003521.1 + 131080 0.66 0.766267
Target:  5'- gGCGaCCGCGGCuCG-CGCgGGCuccgGACg -3'
miRNA:   3'- aCGC-GGCGCCG-GCaGUGgCUGca--CUG- -5'
14503 5' -61.6 NC_003521.1 + 223782 0.66 0.766267
Target:  5'- gGCGCCGUuaccgccgugGGCCGcCAgaCGACG-GGCc -3'
miRNA:   3'- aCGCGGCG----------CCGGCaGUg-GCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 95789 0.66 0.765387
Target:  5'- cGUGCCGCucGGCCacgcgaccagcgcGUCGgCGAUGUcGGCg -3'
miRNA:   3'- aCGCGGCG--CCGG-------------CAGUgGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 74419 0.67 0.757415
Target:  5'- cUGUGCCGCGGCUa----CGACuUGACg -3'
miRNA:   3'- -ACGCGGCGCCGGcagugGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 106766 0.67 0.757415
Target:  5'- gGCGCCcagGCGGUCGaaACCaGGCGUGu- -3'
miRNA:   3'- aCGCGG---CGCCGGCagUGG-CUGCACug -5'
14503 5' -61.6 NC_003521.1 + 48780 0.67 0.757415
Target:  5'- gGaCGCCGCGucuGCCGcgcaCGCCGGCGgugcagaaccUGACg -3'
miRNA:   3'- aC-GCGGCGC---CGGCa---GUGGCUGC----------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 217618 0.67 0.757415
Target:  5'- gGCGUCuCGGCCGcCAucuccUCGGCGUGGu -3'
miRNA:   3'- aCGCGGcGCCGGCaGU-----GGCUGCACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.