miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 112406 0.67 0.757415
Target:  5'- gUGCGCCGacCGGCCGcCuuucggACCGACGcccgcucaGGCg -3'
miRNA:   3'- -ACGCGGC--GCCGGCaG------UGGCUGCa-------CUG- -5'
14503 5' -61.6 NC_003521.1 + 217618 0.67 0.757415
Target:  5'- gGCGUCuCGGCCGcCAucuccUCGGCGUGGu -3'
miRNA:   3'- aCGCGGcGCCGGCaGU-----GGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 166252 0.67 0.757415
Target:  5'- cGCGCCGCcgcuCCGUCGCCGcCcucaGACa -3'
miRNA:   3'- aCGCGGCGcc--GGCAGUGGCuGca--CUG- -5'
14503 5' -61.6 NC_003521.1 + 58966 0.67 0.757415
Target:  5'- gGCGCgaagaaGCGcGCCGUCAggcacugguggUCGGCGUGGu -3'
miRNA:   3'- aCGCGg-----CGC-CGGCAGU-----------GGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 44421 0.67 0.757415
Target:  5'- cUGUGCCGCuGCC--CGCCcauCGUGACg -3'
miRNA:   3'- -ACGCGGCGcCGGcaGUGGcu-GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 184848 0.67 0.757415
Target:  5'- --gGCUGCGGCCccugcaCAUCGGCGUGGu -3'
miRNA:   3'- acgCGGCGCCGGca----GUGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 106766 0.67 0.757415
Target:  5'- gGCGCCcagGCGGUCGaaACCaGGCGUGu- -3'
miRNA:   3'- aCGCGG---CGCCGGCagUGG-CUGCACug -5'
14503 5' -61.6 NC_003521.1 + 154887 0.67 0.756525
Target:  5'- aGCGCuCGCGGCgcgagaaCGUgcucuucgaCGCCGACcUGACc -3'
miRNA:   3'- aCGCG-GCGCCG-------GCA---------GUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 103666 0.67 0.748468
Target:  5'- gGcCGCUGCGGCCGcgGCCauGGCG-GGCg -3'
miRNA:   3'- aC-GCGGCGCCGGCagUGG--CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 72287 0.67 0.748468
Target:  5'- aGCGCCGCcGCCG-CGCUGGcCGccagccugcUGGCg -3'
miRNA:   3'- aCGCGGCGcCGGCaGUGGCU-GC---------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 21286 0.67 0.748468
Target:  5'- aGCGCuuCGCGGUCuggCugCG-CGUGGCg -3'
miRNA:   3'- aCGCG--GCGCCGGca-GugGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 176070 0.67 0.748468
Target:  5'- gGUGCCGC-GCCG--GCCGGCGUcuuGGCc -3'
miRNA:   3'- aCGCGGCGcCGGCagUGGCUGCA---CUG- -5'
14503 5' -61.6 NC_003521.1 + 60683 0.67 0.748468
Target:  5'- cGUGCUGCGGCCG-CGCgGGgGacccgggGGCg -3'
miRNA:   3'- aCGCGGCGCCGGCaGUGgCUgCa------CUG- -5'
14503 5' -61.6 NC_003521.1 + 64743 0.67 0.748468
Target:  5'- gGaCGCCGUGGCCaagacgccgGCCGGCGcGGCa -3'
miRNA:   3'- aC-GCGGCGCCGGcag------UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 28791 0.67 0.748468
Target:  5'- cUGCGCUcCGacaagcCCGUCACCGACGgccaguaccUGGCg -3'
miRNA:   3'- -ACGCGGcGCc-----GGCAGUGGCUGC---------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 145725 0.67 0.747568
Target:  5'- aGCGCgCGCGGCCGcUCAaggcgcccgagccCCuGCGcGACu -3'
miRNA:   3'- aCGCG-GCGCCGGC-AGU-------------GGcUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 139426 0.67 0.747568
Target:  5'- cGgGCucuccugCGUGGCCGUCAagCGGCGcGACg -3'
miRNA:   3'- aCgCG-------GCGCCGGCAGUg-GCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 26499 0.67 0.745766
Target:  5'- gGCGCgaUGCGcucuucaccaccacGCUGcUCACCGugGUGAUg -3'
miRNA:   3'- aCGCG--GCGC--------------CGGC-AGUGGCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 55477 0.67 0.745766
Target:  5'- cUGCGCCGCcuuGCCGUCcuccuggugcuccaGCCaGGCGUaguuGACc -3'
miRNA:   3'- -ACGCGGCGc--CGGCAG--------------UGG-CUGCA----CUG- -5'
14503 5' -61.6 NC_003521.1 + 16290 0.67 0.739431
Target:  5'- gGCGCCGUGGgUGcCuACCGGCccGGCg -3'
miRNA:   3'- aCGCGGCGCCgGCaG-UGGCUGcaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.