miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 60683 0.67 0.748468
Target:  5'- cGUGCUGCGGCCG-CGCgGGgGacccgggGGCg -3'
miRNA:   3'- aCGCGGCGCCGGCaGUGgCUgCa------CUG- -5'
14503 5' -61.6 NC_003521.1 + 61734 0.68 0.65534
Target:  5'- cUGuCGUCGCuaCUGUCACCGACGacgGGCa -3'
miRNA:   3'- -AC-GCGGCGccGGCAGUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 61891 0.66 0.792174
Target:  5'- aGCGagcagaUGCcGCCGUUccCCGACGUGAUg -3'
miRNA:   3'- aCGCg-----GCGcCGGCAGu-GGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 61901 0.67 0.721122
Target:  5'- aGCcUCGUcGCCGUCAUCGugGUcGGCg -3'
miRNA:   3'- aCGcGGCGcCGGCAGUGGCugCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 64743 0.67 0.748468
Target:  5'- gGaCGCCGUGGCCaagacgccgGCCGGCGcGGCa -3'
miRNA:   3'- aC-GCGGCGCCGGcag------UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 65718 0.7 0.541863
Target:  5'- gGCGCCGCggcggcccuGGCCGgcaaaaagggCAUCGACGcuagGACg -3'
miRNA:   3'- aCGCGGCG---------CCGGCa---------GUGGCUGCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 68720 0.71 0.478543
Target:  5'- gGCGCCGuCGGCCG-C-CCGcACG-GACu -3'
miRNA:   3'- aCGCGGC-GCCGGCaGuGGC-UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 69182 0.73 0.387175
Target:  5'- -cCGCCGCGGCCG-CGcuagacauacCCGACGUcGGCg -3'
miRNA:   3'- acGCGGCGCCGGCaGU----------GGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 70758 0.81 0.122478
Target:  5'- cGCGCCGCGGCCGaUCACCagcugcACGUGGa -3'
miRNA:   3'- aCGCGGCGCCGGC-AGUGGc-----UGCACUg -5'
14503 5' -61.6 NC_003521.1 + 71382 0.69 0.598221
Target:  5'- cGcCGCCGCcgacGCCGUCGuCCG-CGUGAg -3'
miRNA:   3'- aC-GCGGCGc---CGGCAGU-GGCuGCACUg -5'
14503 5' -61.6 NC_003521.1 + 72287 0.67 0.748468
Target:  5'- aGCGCCGCcGCCG-CGCUGGcCGccagccugcUGGCg -3'
miRNA:   3'- aCGCGGCGcCGGCaGUGGCU-GC---------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 73184 0.75 0.288742
Target:  5'- cGCGgaGCuGGCCGgCAUCGACGUGACc -3'
miRNA:   3'- aCGCggCG-CCGGCaGUGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 73835 0.66 0.808831
Target:  5'- cGCGCUGaCGGCCGagGgaaCGACGUcaaccacagcGACg -3'
miRNA:   3'- aCGCGGC-GCCGGCagUg--GCUGCA----------CUG- -5'
14503 5' -61.6 NC_003521.1 + 74108 0.66 0.78963
Target:  5'- cGCGaCUGCGcgacgcccaugggcGCCGUgCAggaCGACGUGGCg -3'
miRNA:   3'- aCGC-GGCGC--------------CGGCA-GUg--GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 74182 0.7 0.551153
Target:  5'- cUGCGCCGCGGCgccCGgCGCgCGGCccGACg -3'
miRNA:   3'- -ACGCGGCGCCG---GCaGUG-GCUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 74219 0.7 0.532626
Target:  5'- aGCaGCaGCaGGCCGUCGgCGcCGUGACg -3'
miRNA:   3'- aCG-CGgCG-CCGGCAGUgGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 74419 0.67 0.757415
Target:  5'- cUGUGCCGCGGCUa----CGACuUGACg -3'
miRNA:   3'- -ACGCGGCGCCGGcagugGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 75179 0.66 0.799734
Target:  5'- aGCGCgGCGugcuGCUGcucaacaccguguUCACCGugGUGcACg -3'
miRNA:   3'- aCGCGgCGC----CGGC-------------AGUGGCugCAC-UG- -5'
14503 5' -61.6 NC_003521.1 + 75617 0.81 0.131696
Target:  5'- gGCGCCaCGGCUcaGUCGCCGACGaUGACg -3'
miRNA:   3'- aCGCGGcGCCGG--CAGUGGCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 76223 0.66 0.800568
Target:  5'- aGUgGCgGCGGCCGg---UGGCGUGGCg -3'
miRNA:   3'- aCG-CGgCGCCGGCagugGCUGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.