miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 76469 0.7 0.569871
Target:  5'- gGuCGCUGUGGCgguaggagcUGUCGCCGggacGCGUGGCg -3'
miRNA:   3'- aC-GCGGCGCCG---------GCAGUGGC----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 76961 0.66 0.792174
Target:  5'- aGCauGUCGCGGCCGaugCGCgUGAUGcUGGCg -3'
miRNA:   3'- aCG--CGGCGCCGGCa--GUG-GCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 77080 0.69 0.588742
Target:  5'- aGCGCCGCuGuuGcCGCCGGCGccGCu -3'
miRNA:   3'- aCGCGGCGcCggCaGUGGCUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 77515 0.7 0.547431
Target:  5'- cGCGCCGCugaccguggacacGCCGUCGCaacugGACGUGGu -3'
miRNA:   3'- aCGCGGCGc------------CGGCAGUGg----CUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 77592 0.74 0.334626
Target:  5'- -cCGCCGUGGCCGaacccacgUCACCGGgcgcgccCGUGACg -3'
miRNA:   3'- acGCGGCGCCGGC--------AGUGGCU-------GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 77737 0.66 0.792174
Target:  5'- gGCGcCCGaggacgGGCCGgCcUCGGCGUGGCu -3'
miRNA:   3'- aCGC-GGCg-----CCGGCaGuGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 78459 0.75 0.32835
Target:  5'- gGCGCggcugggaaCGCGGCCcggCGCgCGACGUGACu -3'
miRNA:   3'- aCGCG---------GCGCCGGca-GUG-GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 78521 0.68 0.645822
Target:  5'- cGCGaCGCGGauuCCGcggacUC-CCGGCGUGACg -3'
miRNA:   3'- aCGCgGCGCC---GGC-----AGuGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 79003 0.68 0.643917
Target:  5'- cGgGCCGCGuaccguaGCCGUagaUggaggucuuggugGCCGGCGUGACa -3'
miRNA:   3'- aCgCGGCGC-------CGGCA---G-------------UGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 79760 0.68 0.645822
Target:  5'- aGCGCCG-GGCCGgugaggACCGGCGUu-- -3'
miRNA:   3'- aCGCGGCgCCGGCag----UGGCUGCAcug -5'
14503 5' -61.6 NC_003521.1 + 80505 0.68 0.701614
Target:  5'- cGCGCCGCccacggcuccgauGGCCGUgcccaccgccuUGCCGGCG-GAg -3'
miRNA:   3'- aCGCGGCG-------------CCGGCA-----------GUGGCUGCaCUg -5'
14503 5' -61.6 NC_003521.1 + 85273 0.68 0.683769
Target:  5'- cGCuCCGCGcGCCG--GCUGACGUGgACg -3'
miRNA:   3'- aCGcGGCGC-CGGCagUGGCUGCAC-UG- -5'
14503 5' -61.6 NC_003521.1 + 85654 0.7 0.532626
Target:  5'- gGCaGCCGCGGCCGcCagcuguuccgaGCCGGCGUccaGCa -3'
miRNA:   3'- aCG-CGGCGCCGGCaG-----------UGGCUGCAc--UG- -5'
14503 5' -61.6 NC_003521.1 + 85742 0.66 0.783654
Target:  5'- aGCGCCGCgaacuuGGCCaUgAgCGAgGUGGCc -3'
miRNA:   3'- aCGCGGCG------CCGGcAgUgGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 86263 0.68 0.645822
Target:  5'- cGCGCugagguucugCGCGGCgaUCACCGugGUGcCg -3'
miRNA:   3'- aCGCG----------GCGCCGgcAGUGGCugCACuG- -5'
14503 5' -61.6 NC_003521.1 + 86505 0.69 0.617239
Target:  5'- aGCGuuGaaguCGGCCauGUCGCCGAUG-GGCa -3'
miRNA:   3'- aCGCggC----GCCGG--CAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 86590 0.7 0.569871
Target:  5'- -aCGCCGCaGCCGgggaagaagCGCuCGugGUGGCg -3'
miRNA:   3'- acGCGGCGcCGGCa--------GUG-GCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 86700 0.67 0.730313
Target:  5'- cGgGCCGCGGCgG-CGaCGACGaGGCg -3'
miRNA:   3'- aCgCGGCGCCGgCaGUgGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 87168 0.69 0.588742
Target:  5'- cGUGCgCGCGGCCGUgcagcgcucCACCGAgacgcaccCGcUGGCg -3'
miRNA:   3'- aCGCG-GCGCCGGCA---------GUGGCU--------GC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 87255 0.7 0.532626
Target:  5'- gGUGgaGCGGCUGUgCGCCGugcGCGUGGCc -3'
miRNA:   3'- aCGCggCGCCGGCA-GUGGC---UGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.