miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 87709 0.66 0.808831
Target:  5'- aGcCGCCuGCuGCCGUCGCgcgcgcccggCGGCGUGGu -3'
miRNA:   3'- aC-GCGG-CGcCGGCAGUG----------GCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 88054 0.66 0.775016
Target:  5'- cGCGCggaugagguCGCGGUgGUCGgCGGCGcccgUGACc -3'
miRNA:   3'- aCGCG---------GCGCCGgCAGUgGCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 89305 0.67 0.711865
Target:  5'- cGCGCCGCcucuGGCCGacggcgguaguUCACCGucCGcGAUg -3'
miRNA:   3'- aCGCGGCG----CCGGC-----------AGUGGCu-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 89614 0.75 0.30806
Target:  5'- gGCGCCGCGGU---CACCGugGUGGu -3'
miRNA:   3'- aCGCGGCGCCGgcaGUGGCugCACUg -5'
14503 5' -61.6 NC_003521.1 + 89961 0.72 0.469787
Target:  5'- cGCGUCucugGCGGCCGUUcgggguucaACCGGCGggUGGCg -3'
miRNA:   3'- aCGCGG----CGCCGGCAG---------UGGCUGC--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 90162 0.66 0.800568
Target:  5'- gGCGCCGCcGCCGgagaGCCGccuuCGUcGCg -3'
miRNA:   3'- aCGCGGCGcCGGCag--UGGCu---GCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 90568 0.73 0.410953
Target:  5'- gGCcgGCCGCGGUgcagGCCGACGUGACg -3'
miRNA:   3'- aCG--CGGCGCCGgcagUGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 92246 0.66 0.783654
Target:  5'- gGCGCCGC-GCgGUCuuuugGCCGgucGCGUcGACg -3'
miRNA:   3'- aCGCGGCGcCGgCAG-----UGGC---UGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 93047 0.66 0.792174
Target:  5'- gGCGCUG-GGCUucaaCACCGugGUGGu -3'
miRNA:   3'- aCGCGGCgCCGGca--GUGGCugCACUg -5'
14503 5' -61.6 NC_003521.1 + 95098 0.71 0.487378
Target:  5'- gGCGCCuugaGCGGCCG-CGCgCGcuugaGCGUGGCc -3'
miRNA:   3'- aCGCGG----CGCCGGCaGUG-GC-----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 95152 0.68 0.702548
Target:  5'- cGCGCCGaCGGCaaggaGUCGgCCGGcCG-GGCc -3'
miRNA:   3'- aCGCGGC-GCCGg----CAGU-GGCU-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 95789 0.66 0.765387
Target:  5'- cGUGCCGCucGGCCacgcgaccagcgcGUCGgCGAUGUcGGCg -3'
miRNA:   3'- aCGCGGCG--CCGG-------------CAGUgGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 96651 0.71 0.505273
Target:  5'- cGCGCgGCaGGCgG-CGCCGGCGUG-Cu -3'
miRNA:   3'- aCGCGgCG-CCGgCaGUGGCUGCACuG- -5'
14503 5' -61.6 NC_003521.1 + 97225 0.66 0.783654
Target:  5'- aGCaGCCgGUGGCCGUCAgcaguCCG-CGguaGACg -3'
miRNA:   3'- aCG-CGG-CGCCGGCAGU-----GGCuGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 97278 0.68 0.683769
Target:  5'- gGCgGCUGCuGCuCGUCGCCGGCGgcGCg -3'
miRNA:   3'- aCG-CGGCGcCG-GCAGUGGCUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 98148 0.66 0.775016
Target:  5'- aGCuGCUGCcGCCGUCGCUG-C-UGACg -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGGCuGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 98405 0.68 0.65534
Target:  5'- gGCGCUGCuGCUGUUAuuguCCgGugGUGGCg -3'
miRNA:   3'- aCGCGGCGcCGGCAGU----GG-CugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 98470 0.71 0.505273
Target:  5'- gGCgGCgGCGGCCG-CGgCGGcCGUGGCg -3'
miRNA:   3'- aCG-CGgCGCCGGCaGUgGCU-GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 99005 0.66 0.783654
Target:  5'- gGUaCCGCGGUCGUCuuguaGACGaUGGCg -3'
miRNA:   3'- aCGcGGCGCCGGCAGugg--CUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 99964 0.68 0.706282
Target:  5'- gGCGCCuCGGCCGagACCgcGAagcgcuccagcacguCGUGACg -3'
miRNA:   3'- aCGCGGcGCCGGCagUGG--CU---------------GCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.