miRNA display CGI


Results 121 - 140 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 100705 0.66 0.766267
Target:  5'- gGCGCCGCcGCgGcCGCUGAUGgaggaGGCg -3'
miRNA:   3'- aCGCGGCGcCGgCaGUGGCUGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 102130 0.66 0.792174
Target:  5'- cGUGCCGCccaggcucacGGCCuuGUCGCCGGUGaGGCu -3'
miRNA:   3'- aCGCGGCG----------CCGG--CAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 102333 0.7 0.541863
Target:  5'- gUGCGCgUGgGcGCCGaCGCCGGgGUGGCg -3'
miRNA:   3'- -ACGCG-GCgC-CGGCaGUGGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 102757 0.68 0.702548
Target:  5'- aGCGCCucagcuguccGCGGCgGUCGCgGGCGa--- -3'
miRNA:   3'- aCGCGG----------CGCCGgCAGUGgCUGCacug -5'
14503 5' -61.6 NC_003521.1 + 102794 0.66 0.766267
Target:  5'- cGCGCCgGCGGCCGcCAgcuCgGGCGgcaGCa -3'
miRNA:   3'- aCGCGG-CGCCGGCaGU---GgCUGCac-UG- -5'
14503 5' -61.6 NC_003521.1 + 103666 0.67 0.748468
Target:  5'- gGcCGCUGCGGCCGcgGCCauGGCG-GGCg -3'
miRNA:   3'- aC-GCGGCGCCGGCagUGG--CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 104017 0.72 0.452526
Target:  5'- -aCGCCGgGGUCGUCGgCGggcaGCGUGACc -3'
miRNA:   3'- acGCGGCgCCGGCAGUgGC----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 104906 0.73 0.395
Target:  5'- cGCgGCCGUGGCCGagGCCGGCacaaaGACg -3'
miRNA:   3'- aCG-CGGCGCCGGCagUGGCUGca---CUG- -5'
14503 5' -61.6 NC_003521.1 + 105578 0.66 0.808831
Target:  5'- -cCGCCGcCGuGUCGUCGCCGcCGccGGCg -3'
miRNA:   3'- acGCGGC-GC-CGGCAGUGGCuGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 105935 0.66 0.808831
Target:  5'- cUGCG-UGUGGCCGgCGCgGAUGaUGACc -3'
miRNA:   3'- -ACGCgGCGCCGGCaGUGgCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 106766 0.67 0.757415
Target:  5'- gGCGCCcagGCGGUCGaaACCaGGCGUGu- -3'
miRNA:   3'- aCGCGG---CGCCGGCagUGG-CUGCACug -5'
14503 5' -61.6 NC_003521.1 + 107623 0.66 0.808831
Target:  5'- cGCGCCccgaccGCGGUCGUC-CCGAuCGccgaGGCc -3'
miRNA:   3'- aCGCGG------CGCCGGCAGuGGCU-GCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 108201 0.68 0.678104
Target:  5'- gGCGCCGCcgccgagucuggaaGCCGUUGCgGACGccGACg -3'
miRNA:   3'- aCGCGGCGc-------------CGGCAGUGgCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 108344 0.71 0.505273
Target:  5'- cGCGCCGaCGGCgGUCuCCGAa--GACg -3'
miRNA:   3'- aCGCGGC-GCCGgCAGuGGCUgcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 108942 0.68 0.693181
Target:  5'- aGUG-CGCGGCUGUCGgUGGCGUcuauGACc -3'
miRNA:   3'- aCGCgGCGCCGGCAGUgGCUGCA----CUG- -5'
14503 5' -61.6 NC_003521.1 + 108957 0.67 0.727564
Target:  5'- cGCGCgGCacgauGGCCGUgGCCGccuugaaccagcccACGuUGACg -3'
miRNA:   3'- aCGCGgCG-----CCGGCAgUGGC--------------UGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 109579 0.67 0.738523
Target:  5'- aGCGCCGCucccgucGGCa-UCGCCGuCGcGACg -3'
miRNA:   3'- aCGCGGCG-------CCGgcAGUGGCuGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 109726 0.66 0.808831
Target:  5'- cGCGCCGCcccGCCGUCcggaGCCcGCGcGAg -3'
miRNA:   3'- aCGCGGCGc--CGGCAG----UGGcUGCaCUg -5'
14503 5' -61.6 NC_003521.1 + 110533 0.71 0.505273
Target:  5'- gGCGCCGCGGCC-UCGCCcAgGUaGCc -3'
miRNA:   3'- aCGCGGCGCCGGcAGUGGcUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 110831 0.69 0.617239
Target:  5'- cGCGCCGCcGCCGgcgCAgCGGCaGcGACg -3'
miRNA:   3'- aCGCGGCGcCGGCa--GUgGCUG-CaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.