miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 201666 0.7 0.560491
Target:  5'- cUGgGCCGCGaGCUG-CGCCGcCgGUGGCa -3'
miRNA:   3'- -ACgCGGCGC-CGGCaGUGGCuG-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 200342 0.7 0.560491
Target:  5'- gGCGCCGUGGCg--CGCCG-CG-GACa -3'
miRNA:   3'- aCGCGGCGCCGgcaGUGGCuGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 199313 0.67 0.730313
Target:  5'- gGUGUCGCuGCCGUUACUGGuguCGcUGGCg -3'
miRNA:   3'- aCGCGGCGcCGGCAGUGGCU---GC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 198022 0.69 0.588742
Target:  5'- gGgGaCCGUGGCCGcUGCCGAgCGUGAg -3'
miRNA:   3'- aCgC-GGCGCCGGCaGUGGCU-GCACUg -5'
14503 5' -61.6 NC_003521.1 + 197341 0.67 0.739431
Target:  5'- gGcCGCCGCGGCCagcacgGcCGCCG-CGcUGGCc -3'
miRNA:   3'- aC-GCGGCGCCGG------CaGUGGCuGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 196995 0.69 0.626765
Target:  5'- gGC-CCGCGGCCGgCGgCGGC-UGACc -3'
miRNA:   3'- aCGcGGCGCCGGCaGUgGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 196880 0.66 0.775016
Target:  5'- aGCaGCCGcCGGUgauCGUCGCCGAagaGgucggGACg -3'
miRNA:   3'- aCG-CGGC-GCCG---GCAGUGGCUg--Ca----CUG- -5'
14503 5' -61.6 NC_003521.1 + 196691 0.7 0.536314
Target:  5'- gGCGUCGgaggaggagcagcgaCGGCCGacuUCACCGGCGgcGACg -3'
miRNA:   3'- aCGCGGC---------------GCCGGC---AGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 196547 0.66 0.800568
Target:  5'- gGCGCCcagGUGcacGCUGaUCuccuCCGGCGUGACg -3'
miRNA:   3'- aCGCGG---CGC---CGGC-AGu---GGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 195405 0.71 0.487378
Target:  5'- cGCGCCGaCGGCgGgCACCGGCuaccugGUGAa -3'
miRNA:   3'- aCGCGGC-GCCGgCaGUGGCUG------CACUg -5'
14503 5' -61.6 NC_003521.1 + 195199 0.69 0.598221
Target:  5'- gGCgGCgGUGGCCGUCugCGucgGCGcUGAUg -3'
miRNA:   3'- aCG-CGgCGCCGGCAGugGC---UGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 192239 0.69 0.640107
Target:  5'- gGCGCCGCGggaggguggccguuaGCCGUCACCuucaccagcGGCGUc-- -3'
miRNA:   3'- aCGCGGCGC---------------CGGCAGUGG---------CUGCAcug -5'
14503 5' -61.6 NC_003521.1 + 192092 0.68 0.683769
Target:  5'- uUGUGCUGCaG-CGUCGCCGGCGUc-- -3'
miRNA:   3'- -ACGCGGCGcCgGCAGUGGCUGCAcug -5'
14503 5' -61.6 NC_003521.1 + 192062 0.69 0.626765
Target:  5'- gGCGuCCGCGGCgGUUugUgaGGCGUcGGCu -3'
miRNA:   3'- aCGC-GGCGCCGgCAGugG--CUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 191253 0.7 0.541863
Target:  5'- gGCGCCGCGGCC--CACgCGGCagGUGGu -3'
miRNA:   3'- aCGCGGCGCCGGcaGUG-GCUG--CACUg -5'
14503 5' -61.6 NC_003521.1 + 190356 0.67 0.711865
Target:  5'- cGCGCCG-GGCagcaucucCGUCuccuCCGACGUcGAUa -3'
miRNA:   3'- aCGCGGCgCCG--------GCAGu---GGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 188662 0.75 0.32835
Target:  5'- gGCGgacCCGCGGuaCCGUCGCUGACG-GGCg -3'
miRNA:   3'- aCGC---GGCGCC--GGCAGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 188063 0.66 0.783654
Target:  5'- -aUGCCGCGGUagagccgcuCGUCucccgaucccCUGGCGUGACg -3'
miRNA:   3'- acGCGGCGCCG---------GCAGu---------GGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 187653 0.71 0.501671
Target:  5'- gGCGUCGCcgaccuccucgccGCCGUCcCCGACGUGGu -3'
miRNA:   3'- aCGCGGCGc------------CGGCAGuGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 187640 0.75 0.314715
Target:  5'- cGCGCCGCuGGCCaucuUCAUCGGCGagGGCg -3'
miRNA:   3'- aCGCGGCG-CCGGc---AGUGGCUGCa-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.