miRNA display CGI


Results 61 - 80 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 187487 0.68 0.663892
Target:  5'- cGCGCCggcGUGGUgGUCAcgacgauCCGACGaGACg -3'
miRNA:   3'- aCGCGG---CGCCGgCAGU-------GGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 186475 0.66 0.792174
Target:  5'- cUGCGCCGUcaccaaacuGCCGUgCACCGugcgccugGUGACg -3'
miRNA:   3'- -ACGCGGCGc--------CGGCA-GUGGCug------CACUG- -5'
14503 5' -61.6 NC_003521.1 + 184848 0.67 0.757415
Target:  5'- --gGCUGCGGCCccugcaCAUCGGCGUGGu -3'
miRNA:   3'- acgCGGCGCCGGca----GUGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 184621 0.71 0.478543
Target:  5'- cGUGCgUGCGguacagaccugcGCCGUCACCGGCuuGUGACc -3'
miRNA:   3'- aCGCG-GCGC------------CGGCAGUGGCUG--CACUG- -5'
14503 5' -61.6 NC_003521.1 + 184490 0.66 0.800568
Target:  5'- gUGCGCCcugcGCGGCCG-CGCCucgGUGGu -3'
miRNA:   3'- -ACGCGG----CGCCGGCaGUGGcugCACUg -5'
14503 5' -61.6 NC_003521.1 + 183793 0.66 0.775016
Target:  5'- aGUGCCuggGCGGCgUGuUCAUCcGCGUGGCg -3'
miRNA:   3'- aCGCGG---CGCCG-GC-AGUGGcUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 183656 0.69 0.617239
Target:  5'- cGUGCUGCGGCaCGcCgacgaccuGCCGcGCGUGGCc -3'
miRNA:   3'- aCGCGGCGCCG-GCaG--------UGGC-UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 183435 0.71 0.478543
Target:  5'- gGCGCUGUGGCgCGagAUCGACGcccUGGCg -3'
miRNA:   3'- aCGCGGCGCCG-GCagUGGCUGC---ACUG- -5'
14503 5' -61.6 NC_003521.1 + 183325 0.68 0.693181
Target:  5'- aGCGCCGUGcgcGCCGUCAUgGGCaaGAa -3'
miRNA:   3'- aCGCGGCGC---CGGCAGUGgCUGcaCUg -5'
14503 5' -61.6 NC_003521.1 + 182403 0.68 0.701614
Target:  5'- aGCGCUGCGGCuuCGUCaACCGccgcaucACGcGGCc -3'
miRNA:   3'- aCGCGGCGCCG--GCAG-UGGC-------UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 182040 0.66 0.808831
Target:  5'- aUGCGUCGUcGCCGgcgcgCGCCGcccuGCaGUGGCu -3'
miRNA:   3'- -ACGCGGCGcCGGCa----GUGGC----UG-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 181731 0.68 0.693181
Target:  5'- cGCGCacgcuggccaaGCGGCCGcgcgaUCcgGCCGACGagGACa -3'
miRNA:   3'- aCGCGg----------CGCCGGC-----AG--UGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 181460 0.73 0.419078
Target:  5'- gGCGuCCaGCGGCUGgcgCGCCGccugcaGCGUGGCg -3'
miRNA:   3'- aCGC-GG-CGCCGGCa--GUGGC------UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 181202 0.67 0.739431
Target:  5'- cUGCgaGCCGCGGUCGcCGCCGGgGccGCc -3'
miRNA:   3'- -ACG--CGGCGCCGGCaGUGGCUgCacUG- -5'
14503 5' -61.6 NC_003521.1 + 180878 0.67 0.721122
Target:  5'- cGCGCCG-GGCUGUUgAUCGGCGUccacgucggaGACc -3'
miRNA:   3'- aCGCGGCgCCGGCAG-UGGCUGCA----------CUG- -5'
14503 5' -61.6 NC_003521.1 + 180651 0.69 0.598221
Target:  5'- -aCGCCGCGGCuCGcUACCGGgGcGACg -3'
miRNA:   3'- acGCGGCGCCG-GCaGUGGCUgCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 178507 0.71 0.487378
Target:  5'- aUGCGUCGCGGUaccuCGUCGCCcauccgguaGACG-GGCa -3'
miRNA:   3'- -ACGCGGCGCCG----GCAGUGG---------CUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 177811 0.66 0.808831
Target:  5'- gGCGUCGUGGgCGcCGCCGGCu---- -3'
miRNA:   3'- aCGCGGCGCCgGCaGUGGCUGcacug -5'
14503 5' -61.6 NC_003521.1 + 177766 0.73 0.379452
Target:  5'- gGgGUCGCGGUCGUCgccaggGCCGACGgGGCc -3'
miRNA:   3'- aCgCGGCGCCGGCAG------UGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 177592 0.67 0.710936
Target:  5'- gGCGCCGCcgguuccGGCCGUUccgcuGCCGgaauccGCG-GACg -3'
miRNA:   3'- aCGCGGCG-------CCGGCAG-----UGGC------UGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.