miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 176070 0.67 0.748468
Target:  5'- gGUGCCGC-GCCG--GCCGGCGUcuuGGCc -3'
miRNA:   3'- aCGCGGCGcCGGCagUGGCUGCA---CUG- -5'
14503 5' -61.6 NC_003521.1 + 172786 0.75 0.321479
Target:  5'- gGCGCCGCGGaCCa-CGCCGccCGUGGCg -3'
miRNA:   3'- aCGCGGCGCC-GGcaGUGGCu-GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 172402 0.74 0.335329
Target:  5'- gGCGCCgGCGgaGCCGUCGCCG-CGgGACc -3'
miRNA:   3'- aCGCGG-CGC--CGGCAGUGGCuGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 171863 0.66 0.800568
Target:  5'- aUGCGCaUGCuGGCCGUCucCCgGACcaGACg -3'
miRNA:   3'- -ACGCG-GCG-CCGGCAGu-GG-CUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 171653 0.76 0.252986
Target:  5'- cGCGCCGCGGCgggcgucgggagCGUCGgCGGCaUGACg -3'
miRNA:   3'- aCGCGGCGCCG------------GCAGUgGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 171416 0.68 0.668636
Target:  5'- cGCGCCGUcaCCGUC-CCGcgucugcugcgucucACGUGGCa -3'
miRNA:   3'- aCGCGGCGccGGCAGuGGC---------------UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 170966 0.7 0.579291
Target:  5'- cUGCGCgGCGGCCucaucggcagcGUCAUCGACcUGcCg -3'
miRNA:   3'- -ACGCGgCGCCGG-----------CAGUGGCUGcACuG- -5'
14503 5' -61.6 NC_003521.1 + 169606 0.66 0.808831
Target:  5'- aGUGCCGCGGuuGUagggGACGaGGCg -3'
miRNA:   3'- aCGCGGCGCCggCAguggCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 169550 0.77 0.247393
Target:  5'- cGUGCCGCGGCCcccgccucCGCCGAUGUuGGCg -3'
miRNA:   3'- aCGCGGCGCCGGca------GUGGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 169329 0.66 0.808831
Target:  5'- aGCGUCGCGGCCGg---CGugGUuuCg -3'
miRNA:   3'- aCGCGGCGCCGGCagugGCugCAcuG- -5'
14503 5' -61.6 NC_003521.1 + 168966 0.67 0.730313
Target:  5'- cGCucCCGCuGCUGUCGCCGACGc-GCg -3'
miRNA:   3'- aCGc-GGCGcCGGCAGUGGCUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 168545 0.73 0.410953
Target:  5'- aGCGCgGCGGCgG-CGCUGGCG-GGCu -3'
miRNA:   3'- aCGCGgCGCCGgCaGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 167741 0.73 0.378686
Target:  5'- gGCGCUGCgguGGCCGgcggagcugagggUCACCGACaUGGCg -3'
miRNA:   3'- aCGCGGCG---CCGGC-------------AGUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 167587 0.69 0.598221
Target:  5'- -aCGCCGCuGCUGUUGCCgcucGugGUGGCg -3'
miRNA:   3'- acGCGGCGcCGGCAGUGG----CugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 166652 0.69 0.636295
Target:  5'- gGCGCCGCGGCgcagcggccagCGgCACCuGGgcccCGUGGCg -3'
miRNA:   3'- aCGCGGCGCCG-----------GCaGUGG-CU----GCACUG- -5'
14503 5' -61.6 NC_003521.1 + 166279 0.68 0.645822
Target:  5'- cGCGCacggCGCGGCUGgu-CCG-CGUGGCc -3'
miRNA:   3'- aCGCG----GCGCCGGCaguGGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 166252 0.67 0.757415
Target:  5'- cGCGCCGCcgcuCCGUCGCCGcCcucaGACa -3'
miRNA:   3'- aCGCGGCGcc--GGCAGUGGCuGca--CUG- -5'
14503 5' -61.6 NC_003521.1 + 166218 0.68 0.683769
Target:  5'- gGCGCgGCGGCgaGgcgCGCCGGCcgcggGACg -3'
miRNA:   3'- aCGCGgCGCCGg-Ca--GUGGCUGca---CUG- -5'
14503 5' -61.6 NC_003521.1 + 165271 0.69 0.626765
Target:  5'- gGCGCUgGCGuaGCCGcCGCCGGCGccgcugaacUGACa -3'
miRNA:   3'- aCGCGG-CGC--CGGCaGUGGCUGC---------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 165184 0.71 0.504372
Target:  5'- cUGCGCCGCuguuGCCGUCgucaucgucggcgACUGAgcCGUGGCg -3'
miRNA:   3'- -ACGCGGCGc---CGGCAG-------------UGGCU--GCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.