miRNA display CGI


Results 101 - 120 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 164485 0.66 0.800568
Target:  5'- gUGCGCaagaCGGCCugcgaguucGUCAagGGCGUGACg -3'
miRNA:   3'- -ACGCGgc--GCCGG---------CAGUggCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 164481 0.71 0.487378
Target:  5'- cGcCGCCGCaGCCGUCACCGuCGc--- -3'
miRNA:   3'- aC-GCGGCGcCGGCAGUGGCuGCacug -5'
14503 5' -61.6 NC_003521.1 + 164451 0.75 0.301513
Target:  5'- cGCgGCCGCGGCCGUCACgGuCGccGCu -3'
miRNA:   3'- aCG-CGGCGCCGGCAGUGgCuGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 162234 0.66 0.795547
Target:  5'- aGCGCCGaCGGCgcuggcggggugggCGUCaacgggggugcgacACCGGCGccGACa -3'
miRNA:   3'- aCGCGGC-GCCG--------------GCAG--------------UGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 161207 0.71 0.478543
Target:  5'- gGCGCCGCGGUCGcC-CCGGCaaguucgaUGGCg -3'
miRNA:   3'- aCGCGGCGCCGGCaGuGGCUGc-------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 161142 0.7 0.569871
Target:  5'- cGCgGCCGCgGGCgGUCGCgGACGUc-- -3'
miRNA:   3'- aCG-CGGCG-CCGgCAGUGgCUGCAcug -5'
14503 5' -61.6 NC_003521.1 + 156200 0.71 0.523445
Target:  5'- cUGCaugGCCGaggacgaccUGGCCGUCACCGACGccGAg -3'
miRNA:   3'- -ACG---CGGC---------GCCGGCAGUGGCUGCa-CUg -5'
14503 5' -61.6 NC_003521.1 + 155719 0.7 0.579291
Target:  5'- -cCGCCGCuGCCGcCGCCGAUGgggGAg -3'
miRNA:   3'- acGCGGCGcCGGCaGUGGCUGCa--CUg -5'
14503 5' -61.6 NC_003521.1 + 154887 0.67 0.756525
Target:  5'- aGCGCuCGCGGCgcgagaaCGUgcucuucgaCGCCGACcUGACc -3'
miRNA:   3'- aCGCG-GCGCCG-------GCA---------GUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 154654 0.73 0.395
Target:  5'- cGUGCCGCuGGCCGagGCCGGCagcgaGACg -3'
miRNA:   3'- aCGCGGCG-CCGGCagUGGCUGca---CUG- -5'
14503 5' -61.6 NC_003521.1 + 152157 0.7 0.532626
Target:  5'- cGgGCCGcCGGCC--CACCGACcUGGCg -3'
miRNA:   3'- aCgCGGC-GCCGGcaGUGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 151082 0.73 0.419078
Target:  5'- cGCGCCgGCuGCCGUCACCGccccCGUGcCc -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCu---GCACuG- -5'
14503 5' -61.6 NC_003521.1 + 150977 0.7 0.560491
Target:  5'- gGCGCUgGCGGCCGaCAUCGGCuacGGCg -3'
miRNA:   3'- aCGCGG-CGCCGGCaGUGGCUGca-CUG- -5'
14503 5' -61.6 NC_003521.1 + 150876 0.66 0.800568
Target:  5'- gGCGagaacgaggUGCGGCCGcaCGCCGGCGUcaucGACu -3'
miRNA:   3'- aCGCg--------GCGCCGGCa-GUGGCUGCA----CUG- -5'
14503 5' -61.6 NC_003521.1 + 150681 0.68 0.661043
Target:  5'- gGCGCCGCuGCUGcugggugcugcugCGCCGGCGgcGACu -3'
miRNA:   3'- aCGCGGCGcCGGCa------------GUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 149404 0.75 0.295074
Target:  5'- cGUgGCCGUGGCCGUCACgGACGa--- -3'
miRNA:   3'- aCG-CGGCGCCGGCAGUGgCUGCacug -5'
14503 5' -61.6 NC_003521.1 + 149237 0.7 0.551153
Target:  5'- cUGCGgCGCGGCUacuaCGCCuacGACGUGGCc -3'
miRNA:   3'- -ACGCgGCGCCGGca--GUGG---CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 148880 0.69 0.626765
Target:  5'- aGCcugGCCuCGGCCGUgGCCGACGccGAg -3'
miRNA:   3'- aCG---CGGcGCCGGCAgUGGCUGCa-CUg -5'
14503 5' -61.6 NC_003521.1 + 148424 0.69 0.626765
Target:  5'- gGUGCgGgCGGCCG-CGCCGGCGgcuccaggggUGGCc -3'
miRNA:   3'- aCGCGgC-GCCGGCaGUGGCUGC----------ACUG- -5'
14503 5' -61.6 NC_003521.1 + 146174 0.68 0.645822
Target:  5'- gUGgGCCGCGaGuuGcUgGCCGGCG-GACg -3'
miRNA:   3'- -ACgCGGCGC-CggC-AgUGGCUGCaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.