miRNA display CGI


Results 41 - 60 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 127272 0.77 0.226041
Target:  5'- gGCGCCcaggcGCGGCaCGUCcgacacGCCGugGUGGCg -3'
miRNA:   3'- aCGCGG-----CGCCG-GCAG------UGGCugCACUG- -5'
14503 5' -61.6 NC_003521.1 + 118216 0.78 0.201568
Target:  5'- cGCgGCCGCcGCCGUCGCCGGgGUGGu -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGGCUgCACUg -5'
14503 5' -61.6 NC_003521.1 + 123351 0.81 0.136212
Target:  5'- aGCGCCGCGGCCGUggccuccgacagccgCACCGACa-GGCg -3'
miRNA:   3'- aCGCGGCGCCGGCA---------------GUGGCUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 75617 0.81 0.131696
Target:  5'- gGCGCCaCGGCUcaGUCGCCGACGaUGACg -3'
miRNA:   3'- aCGCGGcGCCGG--CAGUGGCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 70758 0.81 0.122478
Target:  5'- cGCGCCGCGGCCGaUCACCagcugcACGUGGa -3'
miRNA:   3'- aCGCGGCGCCGGC-AGUGGc-----UGCACUg -5'
14503 5' -61.6 NC_003521.1 + 133945 0.74 0.335329
Target:  5'- cUGCGCCGCuacuaCCGUCACCGuACG-GGCg -3'
miRNA:   3'- -ACGCGGCGcc---GGCAGUGGC-UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 38062 0.74 0.359863
Target:  5'- cGCGCCuguacagggguugugGUGGCCGUCGCUGGCaaGACc -3'
miRNA:   3'- aCGCGG---------------CGCCGGCAGUGGCUGcaCUG- -5'
14503 5' -61.6 NC_003521.1 + 126972 0.72 0.455093
Target:  5'- cGCGCCGUcgucgccGGCCGccccgcugccgcugC-CCGACGUGGCg -3'
miRNA:   3'- aCGCGGCG-------CCGGCa-------------GuGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 142357 0.72 0.452526
Target:  5'- gGcCGCCGCGGCCGcCGCCGccuccuccaACGUaGCc -3'
miRNA:   3'- aC-GCGGCGCCGGCaGUGGC---------UGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 116886 0.72 0.444026
Target:  5'- cGCgGCUGCGGCgGcgCGCCGGCGggaGACc -3'
miRNA:   3'- aCG-CGGCGCCGgCa-GUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 58829 0.72 0.444026
Target:  5'- cGCGUgGCGGCCGUgacguUACUGGCGcgGAUg -3'
miRNA:   3'- aCGCGgCGCCGGCA-----GUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 124021 0.72 0.4273
Target:  5'- gGUGCCGCGGUgCGUCAgCGGCugcuUGGCg -3'
miRNA:   3'- aCGCGGCGCCG-GCAGUgGCUGc---ACUG- -5'
14503 5' -61.6 NC_003521.1 + 151082 0.73 0.419078
Target:  5'- cGCGCCgGCuGCCGUCACCGccccCGUGcCc -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCu---GCACuG- -5'
14503 5' -61.6 NC_003521.1 + 31822 0.73 0.419078
Target:  5'- aGCGCCGUcucGGCCcgggCGCCGAagGUGGCg -3'
miRNA:   3'- aCGCGGCG---CCGGca--GUGGCUg-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 168545 0.73 0.410953
Target:  5'- aGCGCgGCGGCgG-CGCUGGCG-GGCu -3'
miRNA:   3'- aCGCGgCGCCGgCaGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 27751 0.73 0.402926
Target:  5'- aGCGCCGCGauGUCGUC-CCGACGgcGCa -3'
miRNA:   3'- aCGCGGCGC--CGGCAGuGGCUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 154654 0.73 0.395
Target:  5'- cGUGCCGCuGGCCGagGCCGGCagcgaGACg -3'
miRNA:   3'- aCGCGGCG-CCGGCagUGGCUGca---CUG- -5'
14503 5' -61.6 NC_003521.1 + 69182 0.73 0.387175
Target:  5'- -cCGCCGCGGCCG-CGcuagacauacCCGACGUcGGCg -3'
miRNA:   3'- acGCGGCGCCGGCaGU----------GGCUGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 224324 0.73 0.379452
Target:  5'- aGCGCCGCaGCCcgugcucguagcGUCGCCGcACGUaGACc -3'
miRNA:   3'- aCGCGGCGcCGG------------CAGUGGC-UGCA-CUG- -5'
14503 5' -61.6 NC_003521.1 + 115101 0.74 0.36432
Target:  5'- cUGCGCCGUcGCCGcCcCCGuCGUGACc -3'
miRNA:   3'- -ACGCGGCGcCGGCaGuGGCuGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.