miRNA display CGI


Results 61 - 80 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 154654 0.73 0.395
Target:  5'- cGUGCCGCuGGCCGagGCCGGCagcgaGACg -3'
miRNA:   3'- aCGCGGCG-CCGGCagUGGCUGca---CUG- -5'
14503 5' -61.6 NC_003521.1 + 27751 0.73 0.402926
Target:  5'- aGCGCCGCGauGUCGUC-CCGACGgcGCa -3'
miRNA:   3'- aCGCGGCGC--CGGCAGuGGCUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 89961 0.72 0.469787
Target:  5'- cGCGUCucugGCGGCCGUUcgggguucaACCGGCGggUGGCg -3'
miRNA:   3'- aCGCGG----CGCCGGCAG---------UGGCUGC--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 43478 0.71 0.478543
Target:  5'- aGCGCgGCGGCCGU-GCUGGcCGcGGCg -3'
miRNA:   3'- aCGCGgCGCCGGCAgUGGCU-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 68720 0.71 0.478543
Target:  5'- gGCGCCGuCGGCCG-C-CCGcACG-GACu -3'
miRNA:   3'- aCGCGGC-GCCGGCaGuGGC-UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 184621 0.71 0.478543
Target:  5'- cGUGCgUGCGguacagaccugcGCCGUCACCGGCuuGUGACc -3'
miRNA:   3'- aCGCG-GCGC------------CGGCAGUGGCUG--CACUG- -5'
14503 5' -61.6 NC_003521.1 + 59716 0.71 0.487378
Target:  5'- cGCGCCGUGGCCGa-GCUGGUG-GACa -3'
miRNA:   3'- aCGCGGCGCCGGCagUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 164481 0.71 0.487378
Target:  5'- cGcCGCCGCaGCCGUCACCGuCGc--- -3'
miRNA:   3'- aC-GCGGCGcCGGCAGUGGCuGCacug -5'
14503 5' -61.6 NC_003521.1 + 195405 0.71 0.487378
Target:  5'- cGCGCCGaCGGCgGgCACCGGCuaccugGUGAa -3'
miRNA:   3'- aCGCGGC-GCCGgCaGUGGCUG------CACUg -5'
14503 5' -61.6 NC_003521.1 + 187653 0.71 0.501671
Target:  5'- gGCGUCGCcgaccuccucgccGCCGUCcCCGACGUGGu -3'
miRNA:   3'- aCGCGGCGc------------CGGCAGuGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 127783 0.72 0.469787
Target:  5'- cGgGCgGCGGCCGUaGCCGcACGUG-Cu -3'
miRNA:   3'- aCgCGgCGCCGGCAgUGGC-UGCACuG- -5'
14503 5' -61.6 NC_003521.1 + 240123 0.72 0.461114
Target:  5'- gGCG-UGCGGUCGUC-CCGGCG-GGCg -3'
miRNA:   3'- aCGCgGCGCCGGCAGuGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 168545 0.73 0.410953
Target:  5'- aGCGCgGCGGCgG-CGCUGGCG-GGCu -3'
miRNA:   3'- aCGCGgCGCCGgCaGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 31822 0.73 0.419078
Target:  5'- aGCGCCGUcucGGCCcgggCGCCGAagGUGGCg -3'
miRNA:   3'- aCGCGGCG---CCGGca--GUGGCUg-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 151082 0.73 0.419078
Target:  5'- cGCGCCgGCuGCCGUCACCGccccCGUGcCc -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCu---GCACuG- -5'
14503 5' -61.6 NC_003521.1 + 124021 0.72 0.4273
Target:  5'- gGUGCCGCGGUgCGUCAgCGGCugcuUGGCg -3'
miRNA:   3'- aCGCGGCGCCG-GCAGUgGCUGc---ACUG- -5'
14503 5' -61.6 NC_003521.1 + 58829 0.72 0.444026
Target:  5'- cGCGUgGCGGCCGUgacguUACUGGCGcgGAUg -3'
miRNA:   3'- aCGCGgCGCCGGCA-----GUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 116886 0.72 0.444026
Target:  5'- cGCgGCUGCGGCgGcgCGCCGGCGggaGACc -3'
miRNA:   3'- aCG-CGGCGCCGgCa-GUGGCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 142357 0.72 0.452526
Target:  5'- gGcCGCCGCGGCCGcCGCCGccuccuccaACGUaGCc -3'
miRNA:   3'- aC-GCGGCGCCGGCaGUGGC---------UGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 126972 0.72 0.455093
Target:  5'- cGCGCCGUcgucgccGGCCGccccgcugccgcugC-CCGACGUGGCg -3'
miRNA:   3'- aCGCGGCG-------CCGGCa-------------GuGGCUGCACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.