miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 85654 0.7 0.532626
Target:  5'- gGCaGCCGCGGCCGcCagcuguuccgaGCCGGCGUccaGCa -3'
miRNA:   3'- aCG-CGGCGCCGGCaG-----------UGGCUGCAc--UG- -5'
14503 5' -61.6 NC_003521.1 + 140456 0.7 0.532626
Target:  5'- cGUGCCGUccCCGUCACCcguccGCGUGGCu -3'
miRNA:   3'- aCGCGGCGccGGCAGUGGc----UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 196691 0.7 0.536314
Target:  5'- gGCGUCGgaggaggagcagcgaCGGCCGacuUCACCGGCGgcGACg -3'
miRNA:   3'- aCGCGGC---------------GCCGGC---AGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 65718 0.7 0.541863
Target:  5'- gGCGCCGCggcggcccuGGCCGgcaaaaagggCAUCGACGcuagGACg -3'
miRNA:   3'- aCGCGGCG---------CCGGCa---------GUGGCUGCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 102333 0.7 0.541863
Target:  5'- gUGCGCgUGgGcGCCGaCGCCGGgGUGGCg -3'
miRNA:   3'- -ACGCG-GCgC-CGGCaGUGGCUgCACUG- -5'
14503 5' -61.6 NC_003521.1 + 210889 0.7 0.541863
Target:  5'- cGuCGCCucgGUGGCCGUCGCCaGGCccuUGACg -3'
miRNA:   3'- aC-GCGG---CGCCGGCAGUGG-CUGc--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 77515 0.7 0.547431
Target:  5'- cGCGCCGCugaccguggacacGCCGUCGCaacugGACGUGGu -3'
miRNA:   3'- aCGCGGCGc------------CGGCAGUGg----CUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 187653 0.71 0.501671
Target:  5'- gGCGUCGCcgaccuccucgccGCCGUCcCCGACGUGGu -3'
miRNA:   3'- aCGCGGCGc------------CGGCAGuGGCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 195405 0.71 0.487378
Target:  5'- cGCGCCGaCGGCgGgCACCGGCuaccugGUGAa -3'
miRNA:   3'- aCGCGGC-GCCGgCaGUGGCUG------CACUg -5'
14503 5' -61.6 NC_003521.1 + 164481 0.71 0.487378
Target:  5'- cGcCGCCGCaGCCGUCACCGuCGc--- -3'
miRNA:   3'- aC-GCGGCGcCGGCAGUGGCuGCacug -5'
14503 5' -61.6 NC_003521.1 + 142357 0.72 0.452526
Target:  5'- gGcCGCCGCGGCCGcCGCCGccuccuccaACGUaGCc -3'
miRNA:   3'- aC-GCGGCGCCGGCaGUGGC---------UGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 126972 0.72 0.455093
Target:  5'- cGCGCCGUcgucgccGGCCGccccgcugccgcugC-CCGACGUGGCg -3'
miRNA:   3'- aCGCGGCG-------CCGGCa-------------GuGGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 240123 0.72 0.461114
Target:  5'- gGCG-UGCGGUCGUC-CCGGCG-GGCg -3'
miRNA:   3'- aCGCgGCGCCGGCAGuGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 127783 0.72 0.469787
Target:  5'- cGgGCgGCGGCCGUaGCCGcACGUG-Cu -3'
miRNA:   3'- aCgCGgCGCCGGCAgUGGC-UGCACuG- -5'
14503 5' -61.6 NC_003521.1 + 89961 0.72 0.469787
Target:  5'- cGCGUCucugGCGGCCGUUcgggguucaACCGGCGggUGGCg -3'
miRNA:   3'- aCGCGG----CGCCGGCAG---------UGGCUGC--ACUG- -5'
14503 5' -61.6 NC_003521.1 + 43478 0.71 0.478543
Target:  5'- aGCGCgGCGGCCGU-GCUGGcCGcGGCg -3'
miRNA:   3'- aCGCGgCGCCGGCAgUGGCU-GCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 68720 0.71 0.478543
Target:  5'- gGCGCCGuCGGCCG-C-CCGcACG-GACu -3'
miRNA:   3'- aCGCGGC-GCCGGCaGuGGC-UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 184621 0.71 0.478543
Target:  5'- cGUGCgUGCGguacagaccugcGCCGUCACCGGCuuGUGACc -3'
miRNA:   3'- aCGCG-GCGC------------CGGCAGUGGCUG--CACUG- -5'
14503 5' -61.6 NC_003521.1 + 59716 0.71 0.487378
Target:  5'- cGCGCCGUGGCCGa-GCUGGUG-GACa -3'
miRNA:   3'- aCGCGGCGCCGGCagUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 149237 0.7 0.551153
Target:  5'- cUGCGgCGCGGCUacuaCGCCuacGACGUGGCc -3'
miRNA:   3'- -ACGCgGCGCCGGca--GUGG---CUGCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.