Results 101 - 120 of 342 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 86590 | 0.7 | 0.569871 |
Target: 5'- -aCGCCGCaGCCGgggaagaagCGCuCGugGUGGCg -3' miRNA: 3'- acGCGGCGcCGGCa--------GUG-GCugCACUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 141362 | 0.7 | 0.579291 |
Target: 5'- gGUGCgGCGGCgGUCGgUGACGcggugcccgaUGACg -3' miRNA: 3'- aCGCGgCGCCGgCAGUgGCUGC----------ACUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 155719 | 0.7 | 0.579291 |
Target: 5'- -cCGCCGCuGCCGcCGCCGAUGgggGAg -3' miRNA: 3'- acGCGGCGcCGGCaGUGGCUGCa--CUg -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 117252 | 0.7 | 0.580234 |
Target: 5'- gGCGCCGCcgccaucccgccaccGCCGUCgucgGCCGugGUGcCg -3' miRNA: 3'- aCGCGGCGc--------------CGGCAG----UGGCugCACuG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 131352 | 0.7 | 0.583068 |
Target: 5'- cGUGCCgucgcaagcucaucgGCGGCauggaGuUCGCCGAgGUGACg -3' miRNA: 3'- aCGCGG---------------CGCCGg----C-AGUGGCUgCACUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 65718 | 0.7 | 0.541863 |
Target: 5'- gGCGCCGCggcggcccuGGCCGgcaaaaagggCAUCGACGcuagGACg -3' miRNA: 3'- aCGCGGCG---------CCGGCa---------GUGGCUGCa---CUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 196691 | 0.7 | 0.536314 |
Target: 5'- gGCGUCGgaggaggagcagcgaCGGCCGacuUCACCGGCGgcGACg -3' miRNA: 3'- aCGCGGC---------------GCCGGC---AGUGGCUGCa-CUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 89961 | 0.72 | 0.469787 |
Target: 5'- cGCGUCucugGCGGCCGUUcgggguucaACCGGCGggUGGCg -3' miRNA: 3'- aCGCGG----CGCCGGCAG---------UGGCUGC--ACUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 43478 | 0.71 | 0.478543 |
Target: 5'- aGCGCgGCGGCCGU-GCUGGcCGcGGCg -3' miRNA: 3'- aCGCGgCGCCGGCAgUGGCU-GCaCUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 68720 | 0.71 | 0.478543 |
Target: 5'- gGCGCCGuCGGCCG-C-CCGcACG-GACu -3' miRNA: 3'- aCGCGGC-GCCGGCaGuGGC-UGCaCUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 184621 | 0.71 | 0.478543 |
Target: 5'- cGUGCgUGCGguacagaccugcGCCGUCACCGGCuuGUGACc -3' miRNA: 3'- aCGCG-GCGC------------CGGCAGUGGCUG--CACUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 59716 | 0.71 | 0.487378 |
Target: 5'- cGCGCCGUGGCCGa-GCUGGUG-GACa -3' miRNA: 3'- aCGCGGCGCCGGCagUGGCUGCaCUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 164481 | 0.71 | 0.487378 |
Target: 5'- cGcCGCCGCaGCCGUCACCGuCGc--- -3' miRNA: 3'- aC-GCGGCGcCGGCAGUGGCuGCacug -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 195405 | 0.71 | 0.487378 |
Target: 5'- cGCGCCGaCGGCgGgCACCGGCuaccugGUGAa -3' miRNA: 3'- aCGCGGC-GCCGgCaGUGGCUG------CACUg -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 187653 | 0.71 | 0.501671 |
Target: 5'- gGCGUCGCcgaccuccucgccGCCGUCcCCGACGUGGu -3' miRNA: 3'- aCGCGGCGc------------CGGCAGuGGCUGCACUg -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 137240 | 0.71 | 0.523445 |
Target: 5'- cGCGCaC-CGGCCGggGCCGACGgcGGCa -3' miRNA: 3'- aCGCG-GcGCCGGCagUGGCUGCa-CUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 53154 | 0.71 | 0.523445 |
Target: 5'- gGCGCguaacaguacaCGCGGCCGcccUCGCCGAUGaagaUGGCc -3' miRNA: 3'- aCGCG-----------GCGCCGGC---AGUGGCUGC----ACUG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 156200 | 0.71 | 0.523445 |
Target: 5'- cUGCaugGCCGaggacgaccUGGCCGUCACCGACGccGAg -3' miRNA: 3'- -ACG---CGGC---------GCCGGCAGUGGCUGCa-CUg -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 85654 | 0.7 | 0.532626 |
Target: 5'- gGCaGCCGCGGCCGcCagcuguuccgaGCCGGCGUccaGCa -3' miRNA: 3'- aCG-CGGCGCCGGCaG-----------UGGCUGCAc--UG- -5' |
|||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 140456 | 0.7 | 0.532626 |
Target: 5'- cGUGCCGUccCCGUCACCcguccGCGUGGCu -3' miRNA: 3'- aCGCGGCGccGGCAGUGGc----UGCACUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home