Results 41 - 60 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14503 | 5' | -61.6 | NC_003521.1 | + | 183435 | 0.71 | 0.478543 |
Target: 5'- gGCGCUGUGGCgCGagAUCGACGcccUGGCg -3' miRNA: 3'- aCGCGGCGCCG-GCagUGGCUGC---ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 167741 | 0.73 | 0.378686 |
Target: 5'- gGCGCUGCgguGGCCGgcggagcugagggUCACCGACaUGGCg -3' miRNA: 3'- aCGCGGCG---CCGGC-------------AGUGGCUGcACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 169550 | 0.77 | 0.247393 |
Target: 5'- cGUGCCGCGGCCcccgccucCGCCGAUGUuGGCg -3' miRNA: 3'- aCGCGGCGCCGGca------GUGGCUGCA-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 161207 | 0.71 | 0.478543 |
Target: 5'- gGCGCCGCGGUCGcC-CCGGCaaguucgaUGGCg -3' miRNA: 3'- aCGCGGCGCCGGCaGuGGCUGc-------ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 22185 | 0.77 | 0.226041 |
Target: 5'- gGCGCCGcCGGCCGUgGCCGcuuaccgccgcGCGcUGGCg -3' miRNA: 3'- aCGCGGC-GCCGGCAgUGGC-----------UGC-ACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 117693 | 0.7 | 0.567053 |
Target: 5'- cGCGCCGCuGCCGUacuucguacagcggcCCGGCGagGACg -3' miRNA: 3'- aCGCGGCGcCGGCAgu-------------GGCUGCa-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 135226 | 0.76 | 0.2764 |
Target: 5'- aGCGCCugaGCGGCUG-CGCCGGCGgcggcGACg -3' miRNA: 3'- aCGCGG---CGCCGGCaGUGGCUGCa----CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 1439 | 0.7 | 0.560491 |
Target: 5'- cUGgGCCGCGaGCUG-CGCCGcCgGUGGCa -3' miRNA: 3'- -ACgCGGCGC-CGGCaGUGGCuG-CACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 111115 | 0.7 | 0.551153 |
Target: 5'- cGgGCCGCGGCCGgcagaaGCgGGCGUccucgcccgucGACa -3' miRNA: 3'- aCgCGGCGCCGGCag----UGgCUGCA-----------CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 43341 | 0.7 | 0.532626 |
Target: 5'- cGCGCCGUccGGCC--CGCCGcGCGUGAa -3' miRNA: 3'- aCGCGGCG--CCGGcaGUGGC-UGCACUg -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 152157 | 0.7 | 0.532626 |
Target: 5'- cGgGCCGcCGGCC--CACCGACcUGGCg -3' miRNA: 3'- aCgCGGC-GCCGGcaGUGGCUGcACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 110533 | 0.71 | 0.505273 |
Target: 5'- gGCGCCGCGGCC-UCGCCcAgGUaGCc -3' miRNA: 3'- aCGCGGCGCCGGcAGUGGcUgCAcUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 178507 | 0.71 | 0.487378 |
Target: 5'- aUGCGUCGCGGUaccuCGUCGCCcauccgguaGACG-GGCa -3' miRNA: 3'- -ACGCGGCGCCG----GCAGUGG---------CUGCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 144042 | 0.72 | 0.461114 |
Target: 5'- aGCGCCGCcGCUGcUGCCGGCGgcGACg -3' miRNA: 3'- aCGCGGCGcCGGCaGUGGCUGCa-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 104017 | 0.72 | 0.452526 |
Target: 5'- -aCGCCGgGGUCGUCGgCGggcaGCGUGACc -3' miRNA: 3'- acGCGGCgCCGGCAGUgGC----UGCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 90568 | 0.73 | 0.410953 |
Target: 5'- gGCcgGCCGCGGUgcagGCCGACGUGACg -3' miRNA: 3'- aCG--CGGCGCCGgcagUGGCUGCACUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 125406 | 0.73 | 0.387175 |
Target: 5'- cGCGCCGCGGCgcugaGUCcggagGCCGugGcGGCc -3' miRNA: 3'- aCGCGGCGCCGg----CAG-----UGGCugCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 172402 | 0.74 | 0.335329 |
Target: 5'- gGCGCCgGCGgaGCCGUCGCCG-CGgGACc -3' miRNA: 3'- aCGCGG-CGC--CGGCAGUGGCuGCaCUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 187640 | 0.75 | 0.314715 |
Target: 5'- cGCGCCGCuGGCCaucuUCAUCGGCGagGGCg -3' miRNA: 3'- aCGCGGCG-CCGGc---AGUGGCUGCa-CUG- -5' |
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14503 | 5' | -61.6 | NC_003521.1 | + | 127068 | 0.75 | 0.288742 |
Target: 5'- gGUGCCGCGGCaggGcCACCGACGagaGGCg -3' miRNA: 3'- aCGCGGCGCCGg--CaGUGGCUGCa--CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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