miRNA display CGI


Results 81 - 100 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 127278 0.7 0.532626
Target:  5'- cGCGCUgGUGGUCGUC-CCGGCGcGAg -3'
miRNA:   3'- aCGCGG-CGCCGGCAGuGGCUGCaCUg -5'
14503 5' -61.6 NC_003521.1 + 139209 0.7 0.560491
Target:  5'- aGCGCCG-GGCCcUgGCCGACGUc-- -3'
miRNA:   3'- aCGCGGCgCCGGcAgUGGCUGCAcug -5'
14503 5' -61.6 NC_003521.1 + 39013 0.7 0.560491
Target:  5'- gGCGCUGCacGGCCGUCAgcagcgaCGGCGggugUGGCg -3'
miRNA:   3'- aCGCGGCG--CCGGCAGUg------GCUGC----ACUG- -5'
14503 5' -61.6 NC_003521.1 + 135899 0.7 0.569871
Target:  5'- gGCGUCGCGcucGUCGUCAUCGuCGUcgGACg -3'
miRNA:   3'- aCGCGGCGC---CGGCAGUGGCuGCA--CUG- -5'
14503 5' -61.6 NC_003521.1 + 170966 0.7 0.579291
Target:  5'- cUGCGCgGCGGCCucaucggcagcGUCAUCGACcUGcCg -3'
miRNA:   3'- -ACGCGgCGCCGG-----------CAGUGGCUGcACuG- -5'
14503 5' -61.6 NC_003521.1 + 208728 0.69 0.60202
Target:  5'- cGCGCCGCcaaacgcauggcgcuGGCCGUgGCC-ACG-GGCc -3'
miRNA:   3'- aCGCGGCG---------------CCGGCAgUGGcUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 122631 0.69 0.626765
Target:  5'- cGCGCUcgGCGGCCccgacuUUGCCGGCG-GGCg -3'
miRNA:   3'- aCGCGG--CGCCGGc-----AGUGGCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 212847 0.72 0.461114
Target:  5'- cUGcCGCCGUGGCCGUgagCGCCG-CcUGGCg -3'
miRNA:   3'- -AC-GCGGCGCCGGCA---GUGGCuGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 235295 0.72 0.452526
Target:  5'- cGCGCCgGCuGCCGUCACCGuCGcuGCu -3'
miRNA:   3'- aCGCGG-CGcCGGCAGUGGCuGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 181460 0.73 0.419078
Target:  5'- gGCGuCCaGCGGCUGgcgCGCCGccugcaGCGUGGCg -3'
miRNA:   3'- aCGC-GG-CGCCGGCa--GUGGC------UGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 44094 0.68 0.664842
Target:  5'- gGCGCCGCcGCCaccaccGUCGCCGcCGgUGAa -3'
miRNA:   3'- aCGCGGCGcCGG------CAGUGGCuGC-ACUg -5'
14503 5' -61.6 NC_003521.1 + 97278 0.68 0.683769
Target:  5'- gGCgGCUGCuGCuCGUCGCCGGCGgcGCg -3'
miRNA:   3'- aCG-CGGCGcCG-GCAGUGGCUGCacUG- -5'
14503 5' -61.6 NC_003521.1 + 130942 0.68 0.687539
Target:  5'- cGCGCCGUggagauggcacgcaaGGCCuUCACCG-CGgugggGGCa -3'
miRNA:   3'- aCGCGGCG---------------CCGGcAGUGGCuGCa----CUG- -5'
14503 5' -61.6 NC_003521.1 + 182403 0.68 0.701614
Target:  5'- aGCGCUGCGGCuuCGUCaACCGccgcaucACGcGGCc -3'
miRNA:   3'- aCGCGGCGCCG--GCAG-UGGC-------UGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 212667 0.68 0.702548
Target:  5'- gGCGUCGCGGgCaugGUCGCCGcCGUcGCc -3'
miRNA:   3'- aCGCGGCGCCgG---CAGUGGCuGCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 14753 0.75 0.288742
Target:  5'- gGCcgGCCGCGGCCGgggcgCGCCuuCGUGGCc -3'
miRNA:   3'- aCG--CGGCGCCGGCa----GUGGcuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 37112 0.75 0.294436
Target:  5'- gGCuGCUGCuGCCGUCGCUacuggcgGACGUGACg -3'
miRNA:   3'- aCG-CGGCGcCGGCAGUGG-------CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 78459 0.75 0.32835
Target:  5'- gGCGCggcugggaaCGCGGCCcggCGCgCGACGUGACu -3'
miRNA:   3'- aCGCG---------GCGCCGGca-GUG-GCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 36795 0.74 0.349611
Target:  5'- cGCGCUGCGgaGCCGcUCGCgGACGgcgGACu -3'
miRNA:   3'- aCGCGGCGC--CGGC-AGUGgCUGCa--CUG- -5'
14503 5' -61.6 NC_003521.1 + 209723 0.73 0.394213
Target:  5'- uUGCGCCGCguguaccGGCCGcCGCCGuCGUcGCu -3'
miRNA:   3'- -ACGCGGCG-------CCGGCaGUGGCuGCAcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.