miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14506 3' -56.7 NC_003521.1 + 210109 0.66 0.96151
Target:  5'- aGGAguaGGGUGAGGACGugGGacaGGUa- -3'
miRNA:   3'- -CCU---CCUACUCCUGCugCUcagCCGgu -5'
14506 3' -56.7 NC_003521.1 + 197424 0.66 0.96151
Target:  5'- aGGaAGGG-GAGGGCGcggGCGAGUCcgaguuGCCGa -3'
miRNA:   3'- -CC-UCCUaCUCCUGC---UGCUCAGc-----CGGU- -5'
14506 3' -56.7 NC_003521.1 + 100598 0.66 0.96151
Target:  5'- cGGuGGAcGAGG-CGGCGAagcGUCucuuGGCCGg -3'
miRNA:   3'- -CCuCCUaCUCCuGCUGCU---CAG----CCGGU- -5'
14506 3' -56.7 NC_003521.1 + 19048 0.66 0.96151
Target:  5'- uGGAGcuucGAGGACGGCGGcgCGGCgCAg -3'
miRNA:   3'- -CCUCcua-CUCCUGCUGCUcaGCCG-GU- -5'
14506 3' -56.7 NC_003521.1 + 98310 0.66 0.95808
Target:  5'- aGGAGGAaGuGGugG-CG-G-CGGCCAc -3'
miRNA:   3'- -CCUCCUaCuCCugCuGCuCaGCCGGU- -5'
14506 3' -56.7 NC_003521.1 + 124598 0.66 0.95808
Target:  5'- uGGccGAcGAGGACGACGAagCGGCg- -3'
miRNA:   3'- -CCucCUaCUCCUGCUGCUcaGCCGgu -5'
14506 3' -56.7 NC_003521.1 + 44933 0.66 0.95808
Target:  5'- cGAGGAcgacgaaGAGGACGGgGAGgaagggCGGCg- -3'
miRNA:   3'- cCUCCUa------CUCCUGCUgCUCa-----GCCGgu -5'
14506 3' -56.7 NC_003521.1 + 160477 0.66 0.95808
Target:  5'- gGGAGGA-GAGG-CGAgGAGaCGGacaCAg -3'
miRNA:   3'- -CCUCCUaCUCCuGCUgCUCaGCCg--GU- -5'
14506 3' -56.7 NC_003521.1 + 88058 0.66 0.95808
Target:  5'- --cGGAUGAGGuCG-CGguGGUCGGCg- -3'
miRNA:   3'- ccuCCUACUCCuGCuGC--UCAGCCGgu -5'
14506 3' -56.7 NC_003521.1 + 46067 0.66 0.95808
Target:  5'- gGGcGGGAUGAGGucGCGACGcc-CGGCg- -3'
miRNA:   3'- -CC-UCCUACUCC--UGCUGCucaGCCGgu -5'
14506 3' -56.7 NC_003521.1 + 139562 0.66 0.95808
Target:  5'- aGGAGauGAUGGGGAUGAUGAaccagGUCuuGCCGu -3'
miRNA:   3'- -CCUC--CUACUCCUGCUGCU-----CAGc-CGGU- -5'
14506 3' -56.7 NC_003521.1 + 197314 0.66 0.95808
Target:  5'- aGGGGGcgGcAGGcGCuGACGGauGUUGGCCGc -3'
miRNA:   3'- -CCUCCuaC-UCC-UG-CUGCU--CAGCCGGU- -5'
14506 3' -56.7 NC_003521.1 + 123708 0.66 0.954447
Target:  5'- aGGAGGcgGcGGcugaGCGGCgGAGgCGGCCu -3'
miRNA:   3'- -CCUCCuaCuCC----UGCUG-CUCaGCCGGu -5'
14506 3' -56.7 NC_003521.1 + 95421 0.66 0.954447
Target:  5'- cGAGG-UGGGGuCGAUGAG-CaGGCCc -3'
miRNA:   3'- cCUCCuACUCCuGCUGCUCaG-CCGGu -5'
14506 3' -56.7 NC_003521.1 + 172338 0.66 0.954447
Target:  5'- cGGAcGGGUGAgGGGCGGCGGGUUcugacGCa- -3'
miRNA:   3'- -CCU-CCUACU-CCUGCUGCUCAGc----CGgu -5'
14506 3' -56.7 NC_003521.1 + 120378 0.66 0.954447
Target:  5'- aGGGGGAUcGGGA--GCGAGaCGGCaCAg -3'
miRNA:   3'- -CCUCCUAcUCCUgcUGCUCaGCCG-GU- -5'
14506 3' -56.7 NC_003521.1 + 164198 0.66 0.950606
Target:  5'- aGGAGGcgGA--ACGGCGGGgCGGCg- -3'
miRNA:   3'- -CCUCCuaCUccUGCUGCUCaGCCGgu -5'
14506 3' -56.7 NC_003521.1 + 45722 0.66 0.950606
Target:  5'- cGGGGcgucUGcGGGACG-CGGGUCaGGCCGg -3'
miRNA:   3'- cCUCCu---AC-UCCUGCuGCUCAG-CCGGU- -5'
14506 3' -56.7 NC_003521.1 + 54151 0.66 0.950606
Target:  5'- -aAGGA-GAGGACGAgGAGUgcugggGGCCc -3'
miRNA:   3'- ccUCCUaCUCCUGCUgCUCAg-----CCGGu -5'
14506 3' -56.7 NC_003521.1 + 90232 0.66 0.950606
Target:  5'- cGGGGAcgugauagUGAGGAgGAgGAGcCGcGCCGc -3'
miRNA:   3'- cCUCCU--------ACUCCUgCUgCUCaGC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.