miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14506 3' -56.7 NC_003521.1 + 26 0.69 0.874314
Target:  5'- cGGGGGGUGGGGGgguguuuuUGGCGGGggGGCa- -3'
miRNA:   3'- -CCUCCUACUCCU--------GCUGCUCagCCGgu -5'
14506 3' -56.7 NC_003521.1 + 4235 0.69 0.849669
Target:  5'- gGGAGGAggaccgagacgggGAGGAgGACGAGaaggaCGGCgGa -3'
miRNA:   3'- -CCUCCUa------------CUCCUgCUGCUCa----GCCGgU- -5'
14506 3' -56.7 NC_003521.1 + 5775 0.71 0.77865
Target:  5'- -cGGGAUGAcGGACGGCcucaugagagGAGUaCGGCCu -3'
miRNA:   3'- ccUCCUACU-CCUGCUG----------CUCA-GCCGGu -5'
14506 3' -56.7 NC_003521.1 + 6023 0.71 0.760692
Target:  5'- cGAGGccGAGGAgccCGACGAGUaaGCCGu -3'
miRNA:   3'- cCUCCuaCUCCU---GCUGCUCAgcCGGU- -5'
14506 3' -56.7 NC_003521.1 + 7728 0.67 0.923072
Target:  5'- gGGuGGG-GAGGGCGgcGCGAG-CGGCgGa -3'
miRNA:   3'- -CCuCCUaCUCCUGC--UGCUCaGCCGgU- -5'
14506 3' -56.7 NC_003521.1 + 11702 0.69 0.862988
Target:  5'- cGGuuGGAUuucGuGGAguuucaagacauuuuCGGCGAGUCGGCCGu -3'
miRNA:   3'- -CCu-CCUA---CuCCU---------------GCUGCUCAGCCGGU- -5'
14506 3' -56.7 NC_003521.1 + 16601 0.67 0.937811
Target:  5'- cGGAGGAU--GGugGugGuGUCcagaGGCCu -3'
miRNA:   3'- -CCUCCUAcuCCugCugCuCAG----CCGGu -5'
14506 3' -56.7 NC_003521.1 + 16897 0.75 0.568619
Target:  5'- uGGAGGAggugGAGGACGAgGAGgCGGaCGa -3'
miRNA:   3'- -CCUCCUa---CUCCUGCUgCUCaGCCgGU- -5'
14506 3' -56.7 NC_003521.1 + 18262 0.66 0.946555
Target:  5'- cGGuGG-UGGGGaccugcccGCGACGGGagGGCCc -3'
miRNA:   3'- -CCuCCuACUCC--------UGCUGCUCagCCGGu -5'
14506 3' -56.7 NC_003521.1 + 19048 0.66 0.96151
Target:  5'- uGGAGcuucGAGGACGGCGGcgCGGCgCAg -3'
miRNA:   3'- -CCUCcua-CUCCUGCUGCUcaGCCG-GU- -5'
14506 3' -56.7 NC_003521.1 + 19092 0.71 0.775985
Target:  5'- aGGAGGAgGGGGACGgggagggagacgacGCGGGUggcgGGCCGc -3'
miRNA:   3'- -CCUCCUaCUCCUGC--------------UGCUCAg---CCGGU- -5'
14506 3' -56.7 NC_003521.1 + 19436 0.7 0.799562
Target:  5'- cGGAGGGUgagaaagggggGAGGcGCGGCGGGaccaugucgcugcgCGGCCAg -3'
miRNA:   3'- -CCUCCUA-----------CUCC-UGCUGCUCa-------------GCCGGU- -5'
14506 3' -56.7 NC_003521.1 + 26065 0.69 0.874314
Target:  5'- gGGGGGAgagGAGGAaGAgGAGaCGGCg- -3'
miRNA:   3'- -CCUCCUa--CUCCUgCUgCUCaGCCGgu -5'
14506 3' -56.7 NC_003521.1 + 26068 0.67 0.939629
Target:  5'- cGGAGuaGAUGuGaucgguguagagauaGACGGCuccgGAGUCGGCCAg -3'
miRNA:   3'- -CCUC--CUACuC---------------CUGCUG----CUCAGCCGGU- -5'
14506 3' -56.7 NC_003521.1 + 28073 0.71 0.787453
Target:  5'- aGGAGGGggGAGGACGACGGcGgggaaGCCGa -3'
miRNA:   3'- -CCUCCUa-CUCCUGCUGCU-Cagc--CGGU- -5'
14506 3' -56.7 NC_003521.1 + 29389 0.68 0.887758
Target:  5'- cGAGGccgagGAGGACGACGAcgaggacaGUCcgGGCCc -3'
miRNA:   3'- cCUCCua---CUCCUGCUGCU--------CAG--CCGGu -5'
14506 3' -56.7 NC_003521.1 + 30993 0.67 0.917723
Target:  5'- cGGAucgGGAUGGGGcgACGACGGcGcCGGCgAg -3'
miRNA:   3'- -CCU---CCUACUCC--UGCUGCU-CaGCCGgU- -5'
14506 3' -56.7 NC_003521.1 + 33610 0.72 0.732998
Target:  5'- gGGAGGAgaggaaccgGAGGACGAugccgcCGAG-CGGCUc -3'
miRNA:   3'- -CCUCCUa--------CUCCUGCU------GCUCaGCCGGu -5'
14506 3' -56.7 NC_003521.1 + 35965 0.73 0.635723
Target:  5'- cGGAGGAUgggcgacGAGGACGACGAaccgggcUUGGUCAg -3'
miRNA:   3'- -CCUCCUA-------CUCCUGCUGCUc------AGCCGGU- -5'
14506 3' -56.7 NC_003521.1 + 36479 0.67 0.917723
Target:  5'- -aAGGAccgGAGGACGACGcugaggGGUCGaCCAu -3'
miRNA:   3'- ccUCCUa--CUCCUGCUGC------UCAGCcGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.