miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14506 5' -60 NC_003521.1 + 78196 0.66 0.888116
Target:  5'- cGGCGuGcGGAGcGGGCGcggCgCUCGuCGGa -3'
miRNA:   3'- -CCGCuC-CCUCaCCCGCa--G-GAGCuGCU- -5'
14506 5' -60 NC_003521.1 + 37526 0.66 0.88748
Target:  5'- aGCGAcguccuGGGGGUGGGCagcggggGUCg-CGGCGGa -3'
miRNA:   3'- cCGCU------CCCUCACCCG-------CAGgaGCUGCU- -5'
14506 5' -60 NC_003521.1 + 46888 0.66 0.88748
Target:  5'- aGGCGAaguGGGuGUcGGGCacucgucgaagggGUCgUCGAUGAc -3'
miRNA:   3'- -CCGCU---CCCuCA-CCCG-------------CAGgAGCUGCU- -5'
14506 5' -60 NC_003521.1 + 17069 0.66 0.88748
Target:  5'- aGCGAGGacgacGAGUGGGaggauuugggcuuCGaCCUCGAgGAg -3'
miRNA:   3'- cCGCUCC-----CUCACCC-------------GCaGGAGCUgCU- -5'
14506 5' -60 NC_003521.1 + 183412 0.66 0.881666
Target:  5'- cGCGAGacGGUGGGCGaCCgcaCGGCGc -3'
miRNA:   3'- cCGCUCccUCACCCGCaGGa--GCUGCu -5'
14506 5' -60 NC_003521.1 + 111755 0.66 0.881666
Target:  5'- cGcCGAGGGucugcgccAGcucaGGGCGcCCUCGugGAc -3'
miRNA:   3'- cC-GCUCCC--------UCa---CCCGCaGGAGCugCU- -5'
14506 5' -60 NC_003521.1 + 215436 0.66 0.881666
Target:  5'- cGCGGgucuGGGAGcaGGGUGUCCggCGcCGAg -3'
miRNA:   3'- cCGCU----CCCUCa-CCCGCAGGa-GCuGCU- -5'
14506 5' -60 NC_003521.1 + 221820 0.66 0.879694
Target:  5'- cGGCGGGGcGGgcguGUcucccucgucgcgcGGcGCGUCCUCGACc- -3'
miRNA:   3'- -CCGCUCC-CU----CA--------------CC-CGCAGGAGCUGcu -5'
14506 5' -60 NC_003521.1 + 212607 0.66 0.868192
Target:  5'- aGCGAGGGgaAGcUGGGCGguugcgauaCCUUgGGCGAc -3'
miRNA:   3'- cCGCUCCC--UC-ACCCGCa--------GGAG-CUGCU- -5'
14506 5' -60 NC_003521.1 + 177785 0.66 0.868192
Target:  5'- gGGcCGAcGGGgccuguccgcuGGUGGGCGUCgUgGGCGc -3'
miRNA:   3'- -CC-GCU-CCC-----------UCACCCGCAGgAgCUGCu -5'
14506 5' -60 NC_003521.1 + 111106 0.66 0.866107
Target:  5'- cGGCGucgacGGGccgcggccggcagaAGcGGGCGUCCUCGcccguCGAc -3'
miRNA:   3'- -CCGCu----CCC--------------UCaCCCGCAGGAGCu----GCU- -5'
14506 5' -60 NC_003521.1 + 29683 0.66 0.865408
Target:  5'- gGGCGAcuGGAGgaugauccgcuGCGUCCUCGGCGc -3'
miRNA:   3'- -CCGCUc-CCUCacc--------CGCAGGAGCUGCu -5'
14506 5' -60 NC_003521.1 + 46335 0.66 0.861177
Target:  5'- uGCGAGG-AG-GGcGCGUCgUCgGACGAg -3'
miRNA:   3'- cCGCUCCcUCaCC-CGCAGgAG-CUGCU- -5'
14506 5' -60 NC_003521.1 + 223936 0.66 0.861177
Target:  5'- cGGcCGAGGGGGUcGaGGCGgCCgCGGgGAa -3'
miRNA:   3'- -CC-GCUCCCUCA-C-CCGCaGGaGCUgCU- -5'
14506 5' -60 NC_003521.1 + 223674 0.66 0.860466
Target:  5'- uGGCcAGGGAGggucGGGCGaagcgcgCCggcaggaUCGACGAc -3'
miRNA:   3'- -CCGcUCCCUCa---CCCGCa------GG-------AGCUGCU- -5'
14506 5' -60 NC_003521.1 + 105658 0.66 0.85832
Target:  5'- aGCucGGGGGUGGGCGgcacgaucaguugCC-CGAUGGg -3'
miRNA:   3'- cCGcuCCCUCACCCGCa------------GGaGCUGCU- -5'
14506 5' -60 NC_003521.1 + 176925 0.66 0.853982
Target:  5'- gGGCGGGGGucGUgGGGCGgucagCCaaGugGGc -3'
miRNA:   3'- -CCGCUCCCu-CA-CCCGCa----GGagCugCU- -5'
14506 5' -60 NC_003521.1 + 148632 0.66 0.853982
Target:  5'- gGGCGGGGGAG-GGGaggCCagGGCa- -3'
miRNA:   3'- -CCGCUCCCUCaCCCgcaGGagCUGcu -5'
14506 5' -60 NC_003521.1 + 100907 0.67 0.846613
Target:  5'- cGGCGAGGG--UGGGC-UCCgcucgCGuCGGg -3'
miRNA:   3'- -CCGCUCCCucACCCGcAGGa----GCuGCU- -5'
14506 5' -60 NC_003521.1 + 150610 0.67 0.846613
Target:  5'- gGGCGuuacuaGAGUGGGCGuUCCUaggUGugGAa -3'
miRNA:   3'- -CCGCucc---CUCACCCGC-AGGA---GCugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.