miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14507 3' -56.5 NC_003521.1 + 135879 0.66 0.959449
Target:  5'- aCGA-CCUucGAGUAacCGACGGCGUcGCGCUc -3'
miRNA:   3'- -GCUcGGA--CUCGU--GCUGCUGCA-CGUGA- -5'
14507 3' -56.5 NC_003521.1 + 213395 0.66 0.959449
Target:  5'- -cGGCCUGGGCugccuggaGGCcuACGUGCGCa -3'
miRNA:   3'- gcUCGGACUCGug------CUGc-UGCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 167387 0.66 0.959449
Target:  5'- gGuGCCgaaaGAGCuCGuCGGCGUGCAg- -3'
miRNA:   3'- gCuCGGa---CUCGuGCuGCUGCACGUga -5'
14507 3' -56.5 NC_003521.1 + 207927 0.66 0.959449
Target:  5'- gGGGCggcGGGCACGGCGGCa-GCACc -3'
miRNA:   3'- gCUCGga-CUCGUGCUGCUGcaCGUGa -5'
14507 3' -56.5 NC_003521.1 + 42690 0.66 0.959449
Target:  5'- aGAGCCgccgaGAuGCGCGACaACGUggccgGCACg -3'
miRNA:   3'- gCUCGGa----CU-CGUGCUGcUGCA-----CGUGa -5'
14507 3' -56.5 NC_003521.1 + 64861 0.66 0.959449
Target:  5'- -aAGCUgaacgGGGCGC--CGACGUGCGCg -3'
miRNA:   3'- gcUCGGa----CUCGUGcuGCUGCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 109479 0.66 0.959449
Target:  5'- uGAGCUUGcgacGGCACGggGCGaaGCGcUGCACg -3'
miRNA:   3'- gCUCGGAC----UCGUGC--UGC--UGC-ACGUGa -5'
14507 3' -56.5 NC_003521.1 + 214560 0.66 0.959449
Target:  5'- cCGGuGCCUGgggugcagcAGCGCuGGCGuucCGUGCGCg -3'
miRNA:   3'- -GCU-CGGAC---------UCGUG-CUGCu--GCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 170950 0.66 0.955854
Target:  5'- -uGGCCUGGGCGUGGCG-C-UGCGCg -3'
miRNA:   3'- gcUCGGACUCGUGCUGCuGcACGUGa -5'
14507 3' -56.5 NC_003521.1 + 18151 0.66 0.955854
Target:  5'- uCGAGCCgcugcucaugcUGGGCAgCGugGagGCGcUGCGCg -3'
miRNA:   3'- -GCUCGG-----------ACUCGU-GCugC--UGC-ACGUGa -5'
14507 3' -56.5 NC_003521.1 + 164584 0.66 0.955854
Target:  5'- uCGcGCCUcacGCuCGAgGACGUGCGCg -3'
miRNA:   3'- -GCuCGGAcu-CGuGCUgCUGCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 26611 0.66 0.955854
Target:  5'- gGGGCaaucGGGCACG-CGGuCGUGUACg -3'
miRNA:   3'- gCUCGga--CUCGUGCuGCU-GCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 111040 0.66 0.955854
Target:  5'- -cGGCCUcGGCGCG-C-ACGUGCGCg -3'
miRNA:   3'- gcUCGGAcUCGUGCuGcUGCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 122821 0.66 0.955854
Target:  5'- uCGcGCUUGAGCuCGugGAUGgcgucGCGCa -3'
miRNA:   3'- -GCuCGGACUCGuGCugCUGCa----CGUGa -5'
14507 3' -56.5 NC_003521.1 + 166211 0.66 0.955854
Target:  5'- --cGCUguuGGCGCGGCGGCGagGCGCg -3'
miRNA:   3'- gcuCGGac-UCGUGCUGCUGCa-CGUGa -5'
14507 3' -56.5 NC_003521.1 + 160318 0.66 0.955854
Target:  5'- -cGGCCaucgGAGC-CGugGGCG-GCGCg -3'
miRNA:   3'- gcUCGGa---CUCGuGCugCUGCaCGUGa -5'
14507 3' -56.5 NC_003521.1 + 116851 0.66 0.955854
Target:  5'- -cGGCCgccGAcCGCGACGACcUGCGCg -3'
miRNA:   3'- gcUCGGa--CUcGUGCUGCUGcACGUGa -5'
14507 3' -56.5 NC_003521.1 + 35992 0.66 0.955854
Target:  5'- cCGGGCUUGgucAGCgACGGCGACGgaggugGCGg- -3'
miRNA:   3'- -GCUCGGAC---UCG-UGCUGCUGCa-----CGUga -5'
14507 3' -56.5 NC_003521.1 + 75157 0.66 0.952049
Target:  5'- gGAuGCCUGGacGCAUGgugccagcGCGGCGUGCuGCUg -3'
miRNA:   3'- gCU-CGGACU--CGUGC--------UGCUGCACG-UGA- -5'
14507 3' -56.5 NC_003521.1 + 149706 0.66 0.952049
Target:  5'- gGAGCCcugUGAGCucuCGcuCGGCGUGCcCg -3'
miRNA:   3'- gCUCGG---ACUCGu--GCu-GCUGCACGuGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.