miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14507 3' -56.5 NC_003521.1 + 74919 0.66 0.952049
Target:  5'- gGAGUCggcccgGcAGCGCGGgGugGUGUACc -3'
miRNA:   3'- gCUCGGa-----C-UCGUGCUgCugCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 149706 0.66 0.952049
Target:  5'- gGAGCCcugUGAGCucuCGcuCGGCGUGCcCg -3'
miRNA:   3'- gCUCGG---ACUCGu--GCu-GCUGCACGuGa -5'
14507 3' -56.5 NC_003521.1 + 159647 0.66 0.94803
Target:  5'- cCGAgGCCUG-GUGCGugGACcaacgGCGCa -3'
miRNA:   3'- -GCU-CGGACuCGUGCugCUGca---CGUGa -5'
14507 3' -56.5 NC_003521.1 + 195392 0.66 0.94803
Target:  5'- gCGAgGCCaUGAccGCGcCGACGGCGgGCACc -3'
miRNA:   3'- -GCU-CGG-ACU--CGU-GCUGCUGCaCGUGa -5'
14507 3' -56.5 NC_003521.1 + 137247 0.66 0.94803
Target:  5'- -cGGCCgGGGC-CGACGGCG-GCAg- -3'
miRNA:   3'- gcUCGGaCUCGuGCUGCUGCaCGUga -5'
14507 3' -56.5 NC_003521.1 + 213114 0.66 0.94803
Target:  5'- uCGAcGCgCUGGGUGUGGCGugGUGCGg- -3'
miRNA:   3'- -GCU-CG-GACUCGUGCUGCugCACGUga -5'
14507 3' -56.5 NC_003521.1 + 111189 0.66 0.94803
Target:  5'- aCGGcGCCgcggacggUGGGCugGGCGAUG-GCGCc -3'
miRNA:   3'- -GCU-CGG--------ACUCGugCUGCUGCaCGUGa -5'
14507 3' -56.5 NC_003521.1 + 135226 0.66 0.947616
Target:  5'- aGcGCCUGAGCGgcugcgcCGGCGGCG-GCGa- -3'
miRNA:   3'- gCuCGGACUCGU-------GCUGCUGCaCGUga -5'
14507 3' -56.5 NC_003521.1 + 192875 0.66 0.945514
Target:  5'- uGuGCUUccGAGCGCGACGGCGguugacgaucagcaGCGCg -3'
miRNA:   3'- gCuCGGA--CUCGUGCUGCUGCa-------------CGUGa -5'
14507 3' -56.5 NC_003521.1 + 117234 0.66 0.943794
Target:  5'- gCGAcGCaaGGGCACGcaucacGCGGCGcUGCACg -3'
miRNA:   3'- -GCU-CGgaCUCGUGC------UGCUGC-ACGUGa -5'
14507 3' -56.5 NC_003521.1 + 87377 0.66 0.943794
Target:  5'- gCGAGCCgcuggccuacGAGCGCGAcCGGC-UGCuGCUg -3'
miRNA:   3'- -GCUCGGa---------CUCGUGCU-GCUGcACG-UGA- -5'
14507 3' -56.5 NC_003521.1 + 16940 0.66 0.943794
Target:  5'- aGAGCCUaugGAGCcCGACaACGUGguCc -3'
miRNA:   3'- gCUCGGA---CUCGuGCUGcUGCACguGa -5'
14507 3' -56.5 NC_003521.1 + 36246 0.66 0.943794
Target:  5'- cCGAcuGCCgGcGCGCGACGugGUGgAUUc -3'
miRNA:   3'- -GCU--CGGaCuCGUGCUGCugCACgUGA- -5'
14507 3' -56.5 NC_003521.1 + 130988 0.66 0.943794
Target:  5'- uCGGGCCgGAGuCACGACGugGccaucuccgUGC-Cg -3'
miRNA:   3'- -GCUCGGaCUC-GUGCUGCugC---------ACGuGa -5'
14507 3' -56.5 NC_003521.1 + 35229 0.66 0.943794
Target:  5'- uCGAGCguccucgGGGCGCGA-GACG-GCACa -3'
miRNA:   3'- -GCUCGga-----CUCGUGCUgCUGCaCGUGa -5'
14507 3' -56.5 NC_003521.1 + 131606 0.66 0.943358
Target:  5'- aGAGCCacgagGAGUGCGAgcUGACGcgcaacaUGCACa -3'
miRNA:   3'- gCUCGGa----CUCGUGCU--GCUGC-------ACGUGa -5'
14507 3' -56.5 NC_003521.1 + 146642 0.66 0.939338
Target:  5'- aGGGCCccGGcCACGACGACG-GCGa- -3'
miRNA:   3'- gCUCGGacUC-GUGCUGCUGCaCGUga -5'
14507 3' -56.5 NC_003521.1 + 86699 0.66 0.939338
Target:  5'- gCGGGCCgcGGCgGCGACGACGagGCGgUg -3'
miRNA:   3'- -GCUCGGacUCG-UGCUGCUGCa-CGUgA- -5'
14507 3' -56.5 NC_003521.1 + 13529 0.67 0.934662
Target:  5'- uGAGCCUGuuccgcuacGCGCG-CGACuuggauucgGUGCGCa -3'
miRNA:   3'- gCUCGGACu--------CGUGCuGCUG---------CACGUGa -5'
14507 3' -56.5 NC_003521.1 + 88010 0.67 0.934662
Target:  5'- aGGGCgCUGAcGUGCGugGACagGUGCAg- -3'
miRNA:   3'- gCUCG-GACU-CGUGCugCUG--CACGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.