miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14507 3' -56.5 NC_003521.1 + 5731 0.69 0.838553
Target:  5'- -cGGCCcGGGCACGGCG-CGUGuCAUg -3'
miRNA:   3'- gcUCGGaCUCGUGCUGCuGCAC-GUGa -5'
14507 3' -56.5 NC_003521.1 + 11443 0.68 0.889278
Target:  5'- cCGuGUCUuuGGGcCACGaACGACGUGUACa -3'
miRNA:   3'- -GCuCGGA--CUC-GUGC-UGCUGCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 13529 0.67 0.934662
Target:  5'- uGAGCCUGuuccgcuacGCGCG-CGACuuggauucgGUGCGCa -3'
miRNA:   3'- gCUCGGACu--------CGUGCuGCUG---------CACGUGa -5'
14507 3' -56.5 NC_003521.1 + 13980 0.77 0.420773
Target:  5'- uGGGCCUGcccGGCGCGGCGGCGggcgaggaccccaugGCGCUg -3'
miRNA:   3'- gCUCGGAC---UCGUGCUGCUGCa--------------CGUGA- -5'
14507 3' -56.5 NC_003521.1 + 14388 0.7 0.8056
Target:  5'- aCGAGCU--GGCGCGcuACGGCGUGuCGCg -3'
miRNA:   3'- -GCUCGGacUCGUGC--UGCUGCAC-GUGa -5'
14507 3' -56.5 NC_003521.1 + 15050 0.68 0.895716
Target:  5'- aCGAGCggcgcGAGCGCGAgCGGCGcGUGCUg -3'
miRNA:   3'- -GCUCGga---CUCGUGCU-GCUGCaCGUGA- -5'
14507 3' -56.5 NC_003521.1 + 16414 0.67 0.929764
Target:  5'- aGcGCCUG-GC-CGGCGAgGUGUACc -3'
miRNA:   3'- gCuCGGACuCGuGCUGCUgCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 16940 0.66 0.943794
Target:  5'- aGAGCCUaugGAGCcCGACaACGUGguCc -3'
miRNA:   3'- gCUCGGA---CUCGuGCUGcUGCACguGa -5'
14507 3' -56.5 NC_003521.1 + 18151 0.66 0.955854
Target:  5'- uCGAGCCgcugcucaugcUGGGCAgCGugGagGCGcUGCGCg -3'
miRNA:   3'- -GCUCGG-----------ACUCGU-GCugC--UGC-ACGUGa -5'
14507 3' -56.5 NC_003521.1 + 19049 0.74 0.586505
Target:  5'- gGAGCUUcGAGgACGGCGGCGcgGCGCa -3'
miRNA:   3'- gCUCGGA-CUCgUGCUGCUGCa-CGUGa -5'
14507 3' -56.5 NC_003521.1 + 19160 0.69 0.846371
Target:  5'- uGAcCgaGAGCACGGCGcugguggccgACGUGCACg -3'
miRNA:   3'- gCUcGgaCUCGUGCUGC----------UGCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 19544 0.67 0.919299
Target:  5'- aGAGCCUGAuCcUGAUGAgCGUGUGCg -3'
miRNA:   3'- gCUCGGACUcGuGCUGCU-GCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 21945 0.68 0.901939
Target:  5'- uCGGGCUgGAGCA-GugGGCGaGCGCg -3'
miRNA:   3'- -GCUCGGaCUCGUgCugCUGCaCGUGa -5'
14507 3' -56.5 NC_003521.1 + 26611 0.66 0.955854
Target:  5'- gGGGCaaucGGGCACG-CGGuCGUGUACg -3'
miRNA:   3'- gCUCGga--CUCGUGCuGCU-GCACGUGa -5'
14507 3' -56.5 NC_003521.1 + 28362 0.72 0.694748
Target:  5'- aCGGGCCUGGccuGguUGAUGGCGUGgCACg -3'
miRNA:   3'- -GCUCGGACU---CguGCUGCUGCAC-GUGa -5'
14507 3' -56.5 NC_003521.1 + 28497 0.75 0.561129
Target:  5'- uCGAGCCUGcAGCACGugGcgaguaucaacgccuGCGUGCcCa -3'
miRNA:   3'- -GCUCGGAC-UCGUGCugC---------------UGCACGuGa -5'
14507 3' -56.5 NC_003521.1 + 28838 0.68 0.881953
Target:  5'- gCGGcGCCUggacgacGAGCuGCGGCGGCGcgGCACg -3'
miRNA:   3'- -GCU-CGGA-------CUCG-UGCUGCUGCa-CGUGa -5'
14507 3' -56.5 NC_003521.1 + 29388 0.67 0.913733
Target:  5'- gCGAgGCCgagGAGgACGACGACGaGgACa -3'
miRNA:   3'- -GCU-CGGa--CUCgUGCUGCUGCaCgUGa -5'
14507 3' -56.5 NC_003521.1 + 29727 0.69 0.861458
Target:  5'- uGAGCCUcGGCGCGACGGacagGCAg- -3'
miRNA:   3'- gCUCGGAcUCGUGCUGCUgca-CGUga -5'
14507 3' -56.5 NC_003521.1 + 29931 0.69 0.83056
Target:  5'- aGGGCCUG-GCACGgccaccgagGCGACGUaCACc -3'
miRNA:   3'- gCUCGGACuCGUGC---------UGCUGCAcGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.