miRNA display CGI


Results 1 - 20 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14507 5' -52.4 NC_003521.1 + 128367 0.66 0.997746
Target:  5'- cCCGcCGGGCGCGcccacCAggGCCGCCUgggCCg -3'
miRNA:   3'- -GGUuGCUCGUGCa----GUagUGGUGGA---GG- -5'
14507 5' -52.4 NC_003521.1 + 164077 0.66 0.997746
Target:  5'- gCCucgGAGguCGUCGUCauGCCugCUUCu -3'
miRNA:   3'- -GGuugCUCguGCAGUAG--UGGugGAGG- -5'
14507 5' -52.4 NC_003521.1 + 43840 0.66 0.997746
Target:  5'- gCCGgccGCGGGCcCGUCAcaggCGCC-CCggCCg -3'
miRNA:   3'- -GGU---UGCUCGuGCAGUa---GUGGuGGa-GG- -5'
14507 5' -52.4 NC_003521.1 + 124542 0.66 0.997746
Target:  5'- uCCAGCGccagcuugcGCACGUaCGUCACgAUCaggUCCg -3'
miRNA:   3'- -GGUUGCu--------CGUGCA-GUAGUGgUGG---AGG- -5'
14507 5' -52.4 NC_003521.1 + 115640 0.66 0.997746
Target:  5'- gCCAugGAGUccACcaUCuUCugCACCUUCg -3'
miRNA:   3'- -GGUugCUCG--UGc-AGuAGugGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 69628 0.66 0.997746
Target:  5'- gUCAGCGGcGCACGUCAUUugUuCC-Cg -3'
miRNA:   3'- -GGUUGCU-CGUGCAGUAGugGuGGaGg -5'
14507 5' -52.4 NC_003521.1 + 126958 0.66 0.997746
Target:  5'- gCCGccGCGGaacccGCGcCGUCGUCGCCgGCCgccCCg -3'
miRNA:   3'- -GGU--UGCU-----CGU-GCAGUAGUGG-UGGa--GG- -5'
14507 5' -52.4 NC_003521.1 + 5954 0.66 0.997746
Target:  5'- uCCAGCGucggguAGCGUGcCGUaACCGCUUCCa -3'
miRNA:   3'- -GGUUGC------UCGUGCaGUAgUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 95843 0.66 0.997746
Target:  5'- gCUGAUGA-UACGUCGUCcguCCucuCCUCCu -3'
miRNA:   3'- -GGUUGCUcGUGCAGUAGu--GGu--GGAGG- -5'
14507 5' -52.4 NC_003521.1 + 186855 0.66 0.997746
Target:  5'- cCCAGCGgcggcgugcAGCACGgcUCGUCGgcCCAgCUCa -3'
miRNA:   3'- -GGUUGC---------UCGUGC--AGUAGU--GGUgGAGg -5'
14507 5' -52.4 NC_003521.1 + 118763 0.66 0.997746
Target:  5'- gUCGGCGGccgugcGCACGUCGccCugCAUCUCg -3'
miRNA:   3'- -GGUUGCU------CGUGCAGUa-GugGUGGAGg -5'
14507 5' -52.4 NC_003521.1 + 6410 0.66 0.997746
Target:  5'- gCGGCGA-CGgGUC-UUGCCGCCUCg -3'
miRNA:   3'- gGUUGCUcGUgCAGuAGUGGUGGAGg -5'
14507 5' -52.4 NC_003521.1 + 221707 0.66 0.997746
Target:  5'- aCCGGCG-GCccgccacccGCGUCGUC-UC-CCUCCc -3'
miRNA:   3'- -GGUUGCuCG---------UGCAGUAGuGGuGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 60014 0.66 0.997746
Target:  5'- gCAGC-AGCGCGaCAgCACCgGCCUCa -3'
miRNA:   3'- gGUUGcUCGUGCaGUaGUGG-UGGAGg -5'
14507 5' -52.4 NC_003521.1 + 156325 0.66 0.997746
Target:  5'- -aGACGGuGCACaUCuaCACCACCUuCCg -3'
miRNA:   3'- ggUUGCU-CGUGcAGuaGUGGUGGA-GG- -5'
14507 5' -52.4 NC_003521.1 + 194017 0.66 0.997746
Target:  5'- aCCGGCG-GCgGCGUCAUCcagACCAUggaaCUCa -3'
miRNA:   3'- -GGUUGCuCG-UGCAGUAG---UGGUG----GAGg -5'
14507 5' -52.4 NC_003521.1 + 75046 0.66 0.997631
Target:  5'- gCCAGCGGGCugGccuUCggCacgaugaugggcaaGCCGCCgCCg -3'
miRNA:   3'- -GGUUGCUCGugC---AGuaG--------------UGGUGGaGG- -5'
14507 5' -52.4 NC_003521.1 + 36367 0.66 0.997429
Target:  5'- gCCuACGAGCACuaccugaugagCAUCACCgagcaguacaacagcGCCUCg -3'
miRNA:   3'- -GGuUGCUCGUGca---------GUAGUGG---------------UGGAGg -5'
14507 5' -52.4 NC_003521.1 + 149989 0.66 0.997344
Target:  5'- aCgGGCGGcgcgcacccgccGCACGaCGaCGCCACCUUCa -3'
miRNA:   3'- -GgUUGCU------------CGUGCaGUaGUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 120579 0.66 0.997344
Target:  5'- -aGGCGAuGCACGgcgCGgcCGCCGgCUCCu -3'
miRNA:   3'- ggUUGCU-CGUGCa--GUa-GUGGUgGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.