miRNA display CGI


Results 1 - 20 of 452 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14507 5' -52.4 NC_003521.1 + 156228 0.75 0.815961
Target:  5'- aCCGAcgcCGAGCugGUCGaccaCACCgACCUCUa -3'
miRNA:   3'- -GGUU---GCUCGugCAGUa---GUGG-UGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 2713 0.77 0.704879
Target:  5'- gCCAcucguGCGGGaGCGcCGUCACCGCCUCg -3'
miRNA:   3'- -GGU-----UGCUCgUGCaGUAGUGGUGGAGg -5'
14507 5' -52.4 NC_003521.1 + 75015 0.77 0.714666
Target:  5'- gCAACGAGCAgGUCucgcgCAUCGCCUgCa -3'
miRNA:   3'- gGUUGCUCGUgCAGua---GUGGUGGAgG- -5'
14507 5' -52.4 NC_003521.1 + 154100 0.77 0.714666
Target:  5'- cCCGugGGGaagAUGUCgAUCACCGCCUCg -3'
miRNA:   3'- -GGUugCUCg--UGCAG-UAGUGGUGGAGg -5'
14507 5' -52.4 NC_003521.1 + 71099 0.76 0.756809
Target:  5'- gUCGACGAcGCACGUCgcucuuggggGacgucgggggacucgUCGCCGCCUCCu -3'
miRNA:   3'- -GGUUGCU-CGUGCAG----------U---------------AGUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 85949 0.76 0.762413
Target:  5'- gCC-GCGAGCGCuuaAUCAgCACCUCCg -3'
miRNA:   3'- -GGuUGCUCGUGcagUAGUgGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 73440 0.76 0.762413
Target:  5'- gCCGACGAGCucuuucggcaccACGUCcUCACCGUCUUCg -3'
miRNA:   3'- -GGUUGCUCG------------UGCAGuAGUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 217609 0.75 0.815961
Target:  5'- aCCAGCaGGgGCGUCucggcCGCCAUCUCCu -3'
miRNA:   3'- -GGUUGcUCgUGCAGua---GUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 212337 0.75 0.815961
Target:  5'- cCCGACGGuCACGccCAUCACCACCcgCUg -3'
miRNA:   3'- -GGUUGCUcGUGCa-GUAGUGGUGGa-GG- -5'
14507 5' -52.4 NC_003521.1 + 66629 0.77 0.695034
Target:  5'- cCCAACGugGGCGCGUCG-CACCugucgACCUUCg -3'
miRNA:   3'- -GGUUGC--UCGUGCAGUaGUGG-----UGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 100259 0.77 0.695034
Target:  5'- aCGACGAGC-UGUCGcCGCCGCCgCCg -3'
miRNA:   3'- gGUUGCUCGuGCAGUaGUGGUGGaGG- -5'
14507 5' -52.4 NC_003521.1 + 240457 0.77 0.695034
Target:  5'- -aGGCGGGCAgCGgucgCAggCGCCGCCUCCg -3'
miRNA:   3'- ggUUGCUCGU-GCa---GUa-GUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 67309 0.84 0.351527
Target:  5'- cCCGACGAGUucugcauCGUCAUgACCACCUUCu -3'
miRNA:   3'- -GGUUGCUCGu------GCAGUAgUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 112540 0.83 0.375026
Target:  5'- gCGGCGAGCugGUCAgCACCauguucgagaacGCCUCCa -3'
miRNA:   3'- gGUUGCUCGugCAGUaGUGG------------UGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 234321 0.82 0.425106
Target:  5'- aCCggUGAGCcucUGcCGUCACCGCCUCCg -3'
miRNA:   3'- -GGuuGCUCGu--GCaGUAGUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 187721 0.79 0.575239
Target:  5'- gCCAGCG-GUACGugacuugucUCAUCGCCACgUCCa -3'
miRNA:   3'- -GGUUGCuCGUGC---------AGUAGUGGUGgAGG- -5'
14507 5' -52.4 NC_003521.1 + 129730 0.79 0.595136
Target:  5'- cCCGucgacGCGAGCGCGUCcgCGCCGUCUUCg -3'
miRNA:   3'- -GGU-----UGCUCGUGCAGuaGUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 123495 0.78 0.625161
Target:  5'- gCCGGCGGGguguCGUCGUCGCCGCUgCCg -3'
miRNA:   3'- -GGUUGCUCgu--GCAGUAGUGGUGGaGG- -5'
14507 5' -52.4 NC_003521.1 + 84979 0.78 0.645214
Target:  5'- gCAGCGAGCucuGCGUaCGguucugcgcCACCACCUCCg -3'
miRNA:   3'- gGUUGCUCG---UGCA-GUa--------GUGGUGGAGG- -5'
14507 5' -52.4 NC_003521.1 + 62789 0.77 0.685138
Target:  5'- cCUGACGGGCccgGCGUCuuugacgaccGUgGCCGCCUCCg -3'
miRNA:   3'- -GGUUGCUCG---UGCAG----------UAgUGGUGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.