miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14508 3' -53.9 NC_003521.1 + 6591 0.66 0.99175
Target:  5'- gGGAUCaGAGUGAUGGGGcGCggg-GCCa -3'
miRNA:   3'- -CCUGGaCUCGCUGCUCU-CGaaagCGG- -5'
14508 3' -53.9 NC_003521.1 + 144076 0.66 0.99175
Target:  5'- cGGCgCUGGGCaACGugcuGGGCUUcUGCCu -3'
miRNA:   3'- cCUG-GACUCGcUGCu---CUCGAAaGCGG- -5'
14508 3' -53.9 NC_003521.1 + 14448 0.66 0.99175
Target:  5'- cGGcCCUGcGGCGGCGucAGC---CGCCg -3'
miRNA:   3'- -CCuGGAC-UCGCUGCucUCGaaaGCGG- -5'
14508 3' -53.9 NC_003521.1 + 145863 0.66 0.99175
Target:  5'- uGGGCCcG-GCGGCG--GGCgg-CGCCg -3'
miRNA:   3'- -CCUGGaCuCGCUGCucUCGaaaGCGG- -5'
14508 3' -53.9 NC_003521.1 + 28387 0.66 0.99175
Target:  5'- aGGACUUcGAGC-ACGAGug---UCGCCa -3'
miRNA:   3'- -CCUGGA-CUCGcUGCUCucgaaAGCGG- -5'
14508 3' -53.9 NC_003521.1 + 61114 0.66 0.99175
Target:  5'- ---gCUGAGCGGCGAGAcGgUgaaGCCc -3'
miRNA:   3'- ccugGACUCGCUGCUCU-CgAaagCGG- -5'
14508 3' -53.9 NC_003521.1 + 72418 0.66 0.99175
Target:  5'- aGGCaCUGAG-GAaGAGGGCgaguccUCGCCg -3'
miRNA:   3'- cCUG-GACUCgCUgCUCUCGaa----AGCGG- -5'
14508 3' -53.9 NC_003521.1 + 118692 0.66 0.991086
Target:  5'- cGugCUGAaagccguguucagccGCGGCGAGAcgccGCUgcaGCCg -3'
miRNA:   3'- cCugGACU---------------CGCUGCUCU----CGAaagCGG- -5'
14508 3' -53.9 NC_003521.1 + 46436 0.66 0.990621
Target:  5'- gGGuauCCggcgGGGCuGCGGGGGCUggUCgGCCu -3'
miRNA:   3'- -CCu--GGa---CUCGcUGCUCUCGAa-AG-CGG- -5'
14508 3' -53.9 NC_003521.1 + 30788 0.66 0.990621
Target:  5'- uGGAUgUGGGCGcgguagcgcacCGAGGGCc--CGCCg -3'
miRNA:   3'- -CCUGgACUCGCu----------GCUCUCGaaaGCGG- -5'
14508 3' -53.9 NC_003521.1 + 131043 0.66 0.990621
Target:  5'- --uCCUGGGCGGCGGcGGCgg--GCCu -3'
miRNA:   3'- ccuGGACUCGCUGCUcUCGaaagCGG- -5'
14508 3' -53.9 NC_003521.1 + 196948 0.66 0.990621
Target:  5'- cGGuaGCgUGGGCGACGgcccgGGAGCcggccggggCGCCu -3'
miRNA:   3'- -CC--UGgACUCGCUGC-----UCUCGaaa------GCGG- -5'
14508 3' -53.9 NC_003521.1 + 166799 0.66 0.990621
Target:  5'- aGGAggUGAcGCGGCGguAGAGCUcgCGCa -3'
miRNA:   3'- -CCUggACU-CGCUGC--UCUCGAaaGCGg -5'
14508 3' -53.9 NC_003521.1 + 23848 0.66 0.990621
Target:  5'- cGACCUGcuGGCGcugugucucuACGAGAaC-UUCGCCu -3'
miRNA:   3'- cCUGGAC--UCGC----------UGCUCUcGaAAGCGG- -5'
14508 3' -53.9 NC_003521.1 + 206153 0.66 0.990621
Target:  5'- aGGACUgccucuacGAGCuGGCcuccgaccugGGGGGCUUuuUCGCCa -3'
miRNA:   3'- -CCUGGa-------CUCG-CUG----------CUCUCGAA--AGCGG- -5'
14508 3' -53.9 NC_003521.1 + 60702 0.66 0.989374
Target:  5'- uGGACCUGGacGaCGACGAcGGCUcccagaCGCUg -3'
miRNA:   3'- -CCUGGACU--C-GCUGCUcUCGAaa----GCGG- -5'
14508 3' -53.9 NC_003521.1 + 207688 0.66 0.989374
Target:  5'- uGACggcGAGCccuacgcggaaaGGCGAaGGCUUUCGCCa -3'
miRNA:   3'- cCUGga-CUCG------------CUGCUcUCGAAAGCGG- -5'
14508 3' -53.9 NC_003521.1 + 205817 0.66 0.989374
Target:  5'- uGGACCUGGGgauCGcACGAGgcccauuucuucGGC--UCGCCc -3'
miRNA:   3'- -CCUGGACUC---GC-UGCUC------------UCGaaAGCGG- -5'
14508 3' -53.9 NC_003521.1 + 38284 0.66 0.989374
Target:  5'- aGGCCgGcGCGcagcagguGCGAGAGCUcgUCgGCCa -3'
miRNA:   3'- cCUGGaCuCGC--------UGCUCUCGAa-AG-CGG- -5'
14508 3' -53.9 NC_003521.1 + 37384 0.66 0.989374
Target:  5'- cGGugUUcGAgGCGGCGGGGGCgcccggGCCu -3'
miRNA:   3'- -CCugGA-CU-CGCUGCUCUCGaaag--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.