miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14508 5' -61.4 NC_003521.1 + 181514 0.66 0.828646
Target:  5'- aCGGaggaGaAGGUgUgcgcgaagacuagcgGGCCGCcgCGACCGCu -3'
miRNA:   3'- aGCCg---C-UCCAgA---------------CCGGCGa-GCUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 101976 0.66 0.825515
Target:  5'- -aGGUGcAGcccaUCUGGCCGCa-GGCCGUa -3'
miRNA:   3'- agCCGC-UCc---AGACCGGCGagCUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 206071 0.66 0.825515
Target:  5'- aUCGGCGuGGUCUcguacGCCGCcugUCGGuacCCGg -3'
miRNA:   3'- -AGCCGCuCCAGAc----CGGCG---AGCU---GGCg -5'
14508 5' -61.4 NC_003521.1 + 43822 0.66 0.825515
Target:  5'- gCaGCcGGGUCagccGCCGC-CGGCCGCg -3'
miRNA:   3'- aGcCGcUCCAGac--CGGCGaGCUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 151261 0.66 0.825515
Target:  5'- aCGGCGuuucGGGUgUGcGCuacggcgcuuaCGC-CGACCGCg -3'
miRNA:   3'- aGCCGC----UCCAgAC-CG-----------GCGaGCUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 168034 0.66 0.824728
Target:  5'- -aGGCGugcGGGUCuuggagcUGuGCCGC-CGACgGCg -3'
miRNA:   3'- agCCGC---UCCAG-------AC-CGGCGaGCUGgCG- -5'
14508 5' -61.4 NC_003521.1 + 7992 0.66 0.82394
Target:  5'- gCGGCGGGGgagguaccggGGCagcgccguaGCUCcaGACCGCc -3'
miRNA:   3'- aGCCGCUCCaga-------CCGg--------CGAG--CUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 124195 0.66 0.82315
Target:  5'- cCGGCuGGGGgugagcgggcccuuUCUGGCC-CgCGACCGg -3'
miRNA:   3'- aGCCG-CUCC--------------AGACCGGcGaGCUGGCg -5'
14508 5' -61.4 NC_003521.1 + 73295 0.66 0.822359
Target:  5'- gCGGC-AGGacgccgagcagacCUGGCUGCUCGACUa- -3'
miRNA:   3'- aGCCGcUCCa------------GACCGGCGAGCUGGcg -5'
14508 5' -61.4 NC_003521.1 + 236434 0.66 0.81758
Target:  5'- cCGGgGucugcaccuGGagcuUCUGGaacCUGCUCGGCCGCa -3'
miRNA:   3'- aGCCgCu--------CC----AGACC---GGCGAGCUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 198211 0.66 0.81758
Target:  5'- gCGGCGAcGGc---GCCGCcggCGGCCGUg -3'
miRNA:   3'- aGCCGCU-CCagacCGGCGa--GCUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 92191 0.66 0.81758
Target:  5'- cUCGGgGccGUUUuucGCCGCcCGGCCGCg -3'
miRNA:   3'- -AGCCgCucCAGAc--CGGCGaGCUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 169864 0.66 0.81758
Target:  5'- gUCGGCGuGGcUCcguccgGaGCCGCUCcGCuCGCu -3'
miRNA:   3'- -AGCCGCuCC-AGa-----C-CGGCGAGcUG-GCG- -5'
14508 5' -61.4 NC_003521.1 + 22184 0.66 0.81758
Target:  5'- -aGGCGccgccGGcCgUGGCCGCUUaccGCCGCg -3'
miRNA:   3'- agCCGCu----CCaG-ACCGGCGAGc--UGGCG- -5'
14508 5' -61.4 NC_003521.1 + 95231 0.66 0.81758
Target:  5'- gCaGCGAGGcCacGGCCGCcgcgUCGuGCCGCc -3'
miRNA:   3'- aGcCGCUCCaGa-CCGGCG----AGC-UGGCG- -5'
14508 5' -61.4 NC_003521.1 + 113367 0.66 0.816779
Target:  5'- cUGGCGGGcGUCaacaacggccagcUGGCCGa-CGAgCCGCu -3'
miRNA:   3'- aGCCGCUC-CAG-------------ACCGGCgaGCU-GGCG- -5'
14508 5' -61.4 NC_003521.1 + 120706 0.66 0.809501
Target:  5'- cUGGUacuuGAGGUUgUGGCC-CUgGACCGUg -3'
miRNA:   3'- aGCCG----CUCCAG-ACCGGcGAgCUGGCG- -5'
14508 5' -61.4 NC_003521.1 + 168519 0.66 0.809501
Target:  5'- aCGGCGAcgccagcaGG-CUGGCgGCcagcgCGGCgGCg -3'
miRNA:   3'- aGCCGCU--------CCaGACCGgCGa----GCUGgCG- -5'
14508 5' -61.4 NC_003521.1 + 97529 0.66 0.809501
Target:  5'- cUCGGgGuGGUCgaGG-CGCUCGAacaUGCg -3'
miRNA:   3'- -AGCCgCuCCAGa-CCgGCGAGCUg--GCG- -5'
14508 5' -61.4 NC_003521.1 + 76342 0.66 0.809501
Target:  5'- -aGGCGAcGGUgacGGCUGCggCGGCgGCa -3'
miRNA:   3'- agCCGCU-CCAga-CCGGCGa-GCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.