miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1451 5' -55.8 NC_001335.1 + 17060 0.66 0.693015
Target:  5'- aUCGGACCcagagcuUGgAgGGCuCCGGUGAGc -3'
miRNA:   3'- gAGCCUGG-------ACaUgCCGuGGUCACUCu -5'
1451 5' -55.8 NC_001335.1 + 29850 0.66 0.68324
Target:  5'- -cUGGugCcGUACGaGCACaagauCAGUGAGAu -3'
miRNA:   3'- gaGCCugGaCAUGC-CGUG-----GUCACUCU- -5'
1451 5' -55.8 NC_001335.1 + 30318 0.66 0.682152
Target:  5'- uUCGGuacucaggacgaaGCCUGggUGGUGCCGGUG-GAg -3'
miRNA:   3'- gAGCC-------------UGGACauGCCGUGGUCACuCU- -5'
1451 5' -55.8 NC_001335.1 + 9741 0.66 0.672334
Target:  5'- uCUCGG-CCUGUugGGCACgA-UGGu- -3'
miRNA:   3'- -GAGCCuGGACAugCCGUGgUcACUcu -5'
1451 5' -55.8 NC_001335.1 + 39884 0.66 0.661389
Target:  5'- uCUCGGAUCUGgaaggACcGCACCAcggucUGGGAa -3'
miRNA:   3'- -GAGCCUGGACa----UGcCGUGGUc----ACUCU- -5'
1451 5' -55.8 NC_001335.1 + 39955 0.66 0.657004
Target:  5'- -gCGGAgCUGgucacgucgcacgACGGcCugCAGUGGGAg -3'
miRNA:   3'- gaGCCUgGACa------------UGCC-GugGUCACUCU- -5'
1451 5' -55.8 NC_001335.1 + 29014 0.67 0.628435
Target:  5'- -aUGGGCCg--GCGGCuGCCGGUGGa- -3'
miRNA:   3'- gaGCCUGGacaUGCCG-UGGUCACUcu -5'
1451 5' -55.8 NC_001335.1 + 18139 0.67 0.617443
Target:  5'- uUCGGACau---CGGCAUCAGcgGAGAu -3'
miRNA:   3'- gAGCCUGgacauGCCGUGGUCa-CUCU- -5'
1451 5' -55.8 NC_001335.1 + 334 0.67 0.584583
Target:  5'- aUCGcGccGCCUGUGCGGCGCUcuauAGaGAGGg -3'
miRNA:   3'- gAGC-C--UGGACAUGCCGUGG----UCaCUCU- -5'
1451 5' -55.8 NC_001335.1 + 17578 0.7 0.439036
Target:  5'- --aGGGCCUGaucaACGGCAUCGGcGGGAu -3'
miRNA:   3'- gagCCUGGACa---UGCCGUGGUCaCUCU- -5'
1451 5' -55.8 NC_001335.1 + 9056 1.08 0.000935
Target:  5'- uCUCGGACCUGUACGGCACCAGUGAGAu -3'
miRNA:   3'- -GAGCCUGGACAUGCCGUGGUCACUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.