miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 3' -59.5 NC_003521.1 + 46431 0.74 0.421917
Target:  5'- -uGCGAGGguauccggcgGGGCUGCGGGg-GCUGGu -3'
miRNA:   3'- cuCGCUCCa---------CCCGGCGCUCaaCGACC- -5'
14514 3' -59.5 NC_003521.1 + 45437 0.66 0.871337
Target:  5'- cGGCGcGGUcauGGCCucgccgugGCGuGUUGCUGGa -3'
miRNA:   3'- cUCGCuCCAc--CCGG--------CGCuCAACGACC- -5'
14514 3' -59.5 NC_003521.1 + 35391 0.66 0.84885
Target:  5'- cGGCGAGGacgcGGGCCGCGcgacagaAGgccuucUGCUGu -3'
miRNA:   3'- cUCGCUCCa---CCCGGCGC-------UCa-----ACGACc -5'
14514 3' -59.5 NC_003521.1 + 31669 0.68 0.76661
Target:  5'- -cGCGAGGUGaGCCGCGAuucgGCUa- -3'
miRNA:   3'- cuCGCUCCACcCGGCGCUcaa-CGAcc -5'
14514 3' -59.5 NC_003521.1 + 23581 0.67 0.809915
Target:  5'- ---gGuGGUGGG-CGCGGGggUGCUGGc -3'
miRNA:   3'- cucgCuCCACCCgGCGCUCa-ACGACC- -5'
14514 3' -59.5 NC_003521.1 + 18747 0.71 0.595396
Target:  5'- uGGCGGcGGUGGcGCCGaCGGGUcGCUGc -3'
miRNA:   3'- cUCGCU-CCACC-CGGC-GCUCAaCGACc -5'
14514 3' -59.5 NC_003521.1 + 18258 0.66 0.87064
Target:  5'- cGAGCGGuGGUGGGgaccugcCCGCGAcg-GgaGGg -3'
miRNA:   3'- -CUCGCU-CCACCC-------GGCGCUcaaCgaCC- -5'
14514 3' -59.5 NC_003521.1 + 13910 0.71 0.614759
Target:  5'- -cGCgGAGG-GGGCCGCGgAGgccgcGCUGGc -3'
miRNA:   3'- cuCG-CUCCaCCCGGCGC-UCaa---CGACC- -5'
14514 3' -59.5 NC_003521.1 + 13608 0.66 0.87548
Target:  5'- cGAGUGGaauGG-GGGgCGCGAGgcuauaaacuggGCUGGg -3'
miRNA:   3'- -CUCGCU---CCaCCCgGCGCUCaa----------CGACC- -5'
14514 3' -59.5 NC_003521.1 + 7727 0.67 0.826273
Target:  5'- uGGGUGGGGaGGGCggCGCGAGcgGC-GGa -3'
miRNA:   3'- -CUCGCUCCaCCCG--GCGCUCaaCGaCC- -5'
14514 3' -59.5 NC_003521.1 + 1419 0.69 0.729985
Target:  5'- aGAGCGAcGacgugaacgaacUGGGCCGCGAGcUGCg-- -3'
miRNA:   3'- -CUCGCUcC------------ACCCGGCGCUCaACGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.