miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 109831 0.66 0.976204
Target:  5'- cGCCCgcgUCAgGCUGgGuACCguGCucacugCCCCCa -3'
miRNA:   3'- -CGGGa--AGU-UGACgC-UGG--UGua----GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 115092 0.66 0.971034
Target:  5'- aCCCUgCucCUGCGccgUCGCcgCCCCCg -3'
miRNA:   3'- cGGGAaGuuGACGCu--GGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 202626 0.66 0.968168
Target:  5'- uGCCCgaccUCGACcGCGAgCACugggagcggCCCCg -3'
miRNA:   3'- -CGGGa---AGUUGaCGCUgGUGua-------GGGGg -5'
14514 5' -55.1 NC_003521.1 + 187407 0.66 0.978518
Target:  5'- cGCaCCUUgcCGAcCUGcCGACgCGcCAUCCCCUg -3'
miRNA:   3'- -CG-GGAA--GUU-GAC-GCUG-GU-GUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 222260 0.66 0.978295
Target:  5'- cGCUCUcCAGCUGCGcgcgcgugaugguGCC-CAgagCCCCg -3'
miRNA:   3'- -CGGGAaGUUGACGC-------------UGGuGUa--GGGGg -5'
14514 5' -55.1 NC_003521.1 + 232467 0.66 0.978518
Target:  5'- uUUCUUCucugGCUGCGAgCGCua-CCCCa -3'
miRNA:   3'- cGGGAAGu---UGACGCUgGUGuagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 80126 0.66 0.976204
Target:  5'- cGCCCUUguGuuuUUGCGGCCggugcugcGCGUCCagCCg -3'
miRNA:   3'- -CGGGAAguU---GACGCUGG--------UGUAGGg-GG- -5'
14514 5' -55.1 NC_003521.1 + 102972 0.66 0.973711
Target:  5'- uUCCUcagUAGCUGgGACgACGUCCCg- -3'
miRNA:   3'- cGGGAa--GUUGACgCUGgUGUAGGGgg -5'
14514 5' -55.1 NC_003521.1 + 59620 0.66 0.976204
Target:  5'- gGCCC--CGGCgGCGACCGCggCUCgCa -3'
miRNA:   3'- -CGGGaaGUUGaCGCUGGUGuaGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 103576 0.66 0.973711
Target:  5'- cGCCCgcgCAgaaGCUGCGcACgUAC-UCCUCCa -3'
miRNA:   3'- -CGGGaa-GU---UGACGC-UG-GUGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 70813 0.66 0.971034
Target:  5'- gGCCCgaagaggcgCAGCaa-GGCCucauggaaaGCGUCCCCCg -3'
miRNA:   3'- -CGGGaa-------GUUGacgCUGG---------UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 184837 0.66 0.976204
Target:  5'- uCCCgcuacUCGcgccGCUGCGACUGCcgaCCCCa -3'
miRNA:   3'- cGGGa----AGU----UGACGCUGGUGuagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 189479 0.66 0.980662
Target:  5'- uUCCUgugCAGUUGaGGCCGCAUCUCCUu -3'
miRNA:   3'- cGGGAa--GUUGACgCUGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 80483 0.66 0.968168
Target:  5'- cGCCC-UCGACgacggagGCcACCGCG-CCgCCCa -3'
miRNA:   3'- -CGGGaAGUUGa------CGcUGGUGUaGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 111910 0.66 0.971034
Target:  5'- cGCCCgcuUCGAcCUGUGuACCgacGCcgCCCUCg -3'
miRNA:   3'- -CGGGa--AGUU-GACGC-UGG---UGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 76372 0.66 0.980662
Target:  5'- cGCCCUUCA--UGCucaGGcCCGCGgcgCCCuCCa -3'
miRNA:   3'- -CGGGAAGUugACG---CU-GGUGUa--GGG-GG- -5'
14514 5' -55.1 NC_003521.1 + 201422 0.66 0.980662
Target:  5'- cGCCCa--AACU-CGGCUccaACAUCgCCCCg -3'
miRNA:   3'- -CGGGaagUUGAcGCUGG---UGUAG-GGGG- -5'
14514 5' -55.1 NC_003521.1 + 19499 0.66 0.970756
Target:  5'- aGCCUUcuuccucUCAGCUGUcgcggGACUACuggCCCUCg -3'
miRNA:   3'- -CGGGA-------AGUUGACG-----CUGGUGua-GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 98610 0.66 0.973711
Target:  5'- uUCUUUCGGCuucUGCcGCCACGUCgCUCCu -3'
miRNA:   3'- cGGGAAGUUG---ACGcUGGUGUAG-GGGG- -5'
14514 5' -55.1 NC_003521.1 + 94010 0.66 0.973711
Target:  5'- cGCCCUUCcGgaGUGACgCACAUagcucgccggggCCCgCCu -3'
miRNA:   3'- -CGGGAAGuUgaCGCUG-GUGUA------------GGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.