miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 146202 1.13 0.003154
Target:  5'- gGCCCUUCAACUGCGACCACAUCCCCCu -3'
miRNA:   3'- -CGGGAAGUUGACGCUGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 126069 0.81 0.335137
Target:  5'- uGUCCagCAGCUGUGGCCGCGccaCCCCCa -3'
miRNA:   3'- -CGGGaaGUUGACGCUGGUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 48438 0.8 0.381204
Target:  5'- aGCaCCgUCAGCUGCuGAagUCGCGUCCCCCa -3'
miRNA:   3'- -CG-GGaAGUUGACG-CU--GGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 84684 0.78 0.448847
Target:  5'- cGCCag-CAGCUGCGugCACA-CCUCCa -3'
miRNA:   3'- -CGGgaaGUUGACGCugGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 89784 0.78 0.457763
Target:  5'- gGCgCUUUCAAC-GCGACCACGcggUUCCCCg -3'
miRNA:   3'- -CG-GGAAGUUGaCGCUGGUGU---AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 197183 0.76 0.541807
Target:  5'- uGCUCUcCGGCgGCGGCCGCcgCCUCCu -3'
miRNA:   3'- -CGGGAaGUUGaCGCUGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 187493 0.76 0.555383
Target:  5'- gGCCCUUCAacugguacuucaccuACUGCGACCuGC-UCCgCCu -3'
miRNA:   3'- -CGGGAAGU---------------UGACGCUGG-UGuAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 174693 0.76 0.5907
Target:  5'- gGUCCUUCAgacACUGCaGCCACAggUCCCUa -3'
miRNA:   3'- -CGGGAAGU---UGACGcUGGUGU--AGGGGg -5'
14514 5' -55.1 NC_003521.1 + 93758 0.75 0.620424
Target:  5'- uCCCUUCAGaugaugaUGCGACUcCcUCCCCCg -3'
miRNA:   3'- cGGGAAGUUg------ACGCUGGuGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 170716 0.74 0.650222
Target:  5'- gGCCCUUCGGCggcacGcCGGCCAgGUgCCCUg -3'
miRNA:   3'- -CGGGAAGUUGa----C-GCUGGUgUAgGGGG- -5'
14514 5' -55.1 NC_003521.1 + 14449 0.74 0.660138
Target:  5'- gGCCCUgCGGCgGCGucaGCCGCcgCUCCCg -3'
miRNA:   3'- -CGGGAaGUUGaCGC---UGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 226706 0.74 0.660138
Target:  5'- aGCCCUUCGGCg--GACCcagacacaggcaGCGUCCCUCg -3'
miRNA:   3'- -CGGGAAGUUGacgCUGG------------UGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 204148 0.73 0.718907
Target:  5'- aGCCCggccUCAGCU-CGGCCGagaCCCCCa -3'
miRNA:   3'- -CGGGa---AGUUGAcGCUGGUguaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 28145 0.73 0.718907
Target:  5'- uGCCCUggCGACggcgGCGACCAUG-CCCgCg -3'
miRNA:   3'- -CGGGAa-GUUGa---CGCUGGUGUaGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 60676 0.73 0.718907
Target:  5'- uGCUCUUCGuGCUGCGGCCGCGcgggggaCCCg -3'
miRNA:   3'- -CGGGAAGU-UGACGCUGGUGUagg----GGG- -5'
14514 5' -55.1 NC_003521.1 + 187690 0.73 0.718907
Target:  5'- cGCCCUcgggCGACUGCGuguACCugAUCUCgCg -3'
miRNA:   3'- -CGGGAa---GUUGACGC---UGGugUAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 129728 0.73 0.738024
Target:  5'- gGCCCgUCGAC-GCGAgCGCGUCCgCgCCg -3'
miRNA:   3'- -CGGGaAGUUGaCGCUgGUGUAGG-G-GG- -5'
14514 5' -55.1 NC_003521.1 + 108530 0.73 0.738024
Target:  5'- --gCUUCGACgGCGACCugGUCaCCCg -3'
miRNA:   3'- cggGAAGUUGaCGCUGGugUAGgGGG- -5'
14514 5' -55.1 NC_003521.1 + 174044 0.72 0.766028
Target:  5'- gGCCCgcacgUgGGCUGCGAUCGCcucGUCCUCa -3'
miRNA:   3'- -CGGGa----AgUUGACGCUGGUG---UAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 53881 0.72 0.77515
Target:  5'- aGCUgcUCGAgUGCGuucGCCGCcgCCCCCg -3'
miRNA:   3'- -CGGgaAGUUgACGC---UGGUGuaGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.