Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14514 | 5' | -55.1 | NC_003521.1 | + | 1491 | 0.67 | 0.950798 |
Target: 5'- cGCCCggaCGACUGCG-CCAa---CCCUg -3' miRNA: 3'- -CGGGaa-GUUGACGCuGGUguagGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 2335 | 0.68 | 0.946686 |
Target: 5'- cUCCUggGGCUGCugacccugGGCCGCGUCUCCg -3' miRNA: 3'- cGGGAagUUGACG--------CUGGUGUAGGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 2399 | 0.66 | 0.968168 |
Target: 5'- uGCCCgaccUCGACcGCGAgCACugggagcggCCCCg -3' miRNA: 3'- -CGGGa---AGUUGaCGCUgGUGua-------GGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 7071 | 0.66 | 0.97874 |
Target: 5'- uGCCCccggugagaagaagCAgacGCgGCGGCgGCGUCCUCCu -3' miRNA: 3'- -CGGGaa------------GU---UGaCGCUGgUGUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 8534 | 0.66 | 0.968168 |
Target: 5'- uGCCCggaccgUgGGC-GCGACgACAUCCaCCg -3' miRNA: 3'- -CGGGa-----AgUUGaCGCUGgUGUAGGgGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 11766 | 0.66 | 0.973711 |
Target: 5'- cGCCCUggggacggcUCAucuGCUGCGAgga-GUCCCUCg -3' miRNA: 3'- -CGGGA---------AGU---UGACGCUggugUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 14449 | 0.74 | 0.660138 |
Target: 5'- gGCCCUgCGGCgGCGucaGCCGCcgCUCCCg -3' miRNA: 3'- -CGGGAaGUUGaCGC---UGGUGuaGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 16204 | 0.68 | 0.933023 |
Target: 5'- gGCCCUUCGAg-GUGGCgGCG-CCCUg -3' miRNA: 3'- -CGGGAAGUUgaCGCUGgUGUaGGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 16392 | 0.68 | 0.922792 |
Target: 5'- cCCCUUCAugUGU--CCGCGUCCUa- -3' miRNA: 3'- cGGGAAGUugACGcuGGUGUAGGGgg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 17377 | 0.67 | 0.958372 |
Target: 5'- gGCCCagacUCGAgaGgGACCGC-UCCCUa -3' miRNA: 3'- -CGGGa---AGUUgaCgCUGGUGuAGGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 18199 | 0.7 | 0.886742 |
Target: 5'- gGCCCUUCGAUcacaUGuCGGCCGCggaGUUCCgCg -3' miRNA: 3'- -CGGGAAGUUG----AC-GCUGGUG---UAGGGgG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 18757 | 0.69 | 0.90576 |
Target: 5'- gGCgCCgacgggUCGcuGCUGCGACgGCuggugCCCCCc -3' miRNA: 3'- -CG-GGa-----AGU--UGACGCUGgUGua---GGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 18810 | 0.66 | 0.980662 |
Target: 5'- cGCCCUgccugCAgauGCUgaGCGACCGCAaCCgCg -3' miRNA: 3'- -CGGGAa----GU---UGA--CGCUGGUGUaGGgGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 19499 | 0.66 | 0.970756 |
Target: 5'- aGCCUUcuuccucUCAGCUGUcgcggGACUACuggCCCUCg -3' miRNA: 3'- -CGGGA-------AGUUGACG-----CUGGUGua-GGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 22365 | 0.7 | 0.858442 |
Target: 5'- cGCCCa-CGGCguggUGcCGGCCAUGUCCUCCg -3' miRNA: 3'- -CGGGaaGUUG----AC-GCUGGUGUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 23932 | 0.68 | 0.941909 |
Target: 5'- cGCCCUccUCAcCUGCGACgACcucaucgGUCUcgCCCg -3' miRNA: 3'- -CGGGA--AGUuGACGCUGgUG-------UAGG--GGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 25067 | 0.66 | 0.973711 |
Target: 5'- cGCCCUUCAGCgGCaa-CGCGUCgUCg -3' miRNA: 3'- -CGGGAAGUUGaCGcugGUGUAGgGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 25566 | 0.69 | 0.917338 |
Target: 5'- cGCCCUUcCAGCUguugGCGGCCucGCucuUCaCCCUg -3' miRNA: 3'- -CGGGAA-GUUGA----CGCUGG--UGu--AG-GGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 26974 | 0.68 | 0.948357 |
Target: 5'- cGCCCUgcagCGagacugggccgaacuGCUGCGACUACA-CCgCaCCg -3' miRNA: 3'- -CGGGAa---GU---------------UGACGCUGGUGUaGG-G-GG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 27203 | 0.66 | 0.973711 |
Target: 5'- aUCCUgcuGCgcgGCGACCGCca-CCCCa -3' miRNA: 3'- cGGGAaguUGa--CGCUGGUGuagGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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