miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 1491 0.67 0.950798
Target:  5'- cGCCCggaCGACUGCG-CCAa---CCCUg -3'
miRNA:   3'- -CGGGaa-GUUGACGCuGGUguagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 2335 0.68 0.946686
Target:  5'- cUCCUggGGCUGCugacccugGGCCGCGUCUCCg -3'
miRNA:   3'- cGGGAagUUGACG--------CUGGUGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 2399 0.66 0.968168
Target:  5'- uGCCCgaccUCGACcGCGAgCACugggagcggCCCCg -3'
miRNA:   3'- -CGGGa---AGUUGaCGCUgGUGua-------GGGGg -5'
14514 5' -55.1 NC_003521.1 + 7071 0.66 0.97874
Target:  5'- uGCCCccggugagaagaagCAgacGCgGCGGCgGCGUCCUCCu -3'
miRNA:   3'- -CGGGaa------------GU---UGaCGCUGgUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 8534 0.66 0.968168
Target:  5'- uGCCCggaccgUgGGC-GCGACgACAUCCaCCg -3'
miRNA:   3'- -CGGGa-----AgUUGaCGCUGgUGUAGGgGG- -5'
14514 5' -55.1 NC_003521.1 + 11766 0.66 0.973711
Target:  5'- cGCCCUggggacggcUCAucuGCUGCGAgga-GUCCCUCg -3'
miRNA:   3'- -CGGGA---------AGU---UGACGCUggugUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 14449 0.74 0.660138
Target:  5'- gGCCCUgCGGCgGCGucaGCCGCcgCUCCCg -3'
miRNA:   3'- -CGGGAaGUUGaCGC---UGGUGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 16204 0.68 0.933023
Target:  5'- gGCCCUUCGAg-GUGGCgGCG-CCCUg -3'
miRNA:   3'- -CGGGAAGUUgaCGCUGgUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 16392 0.68 0.922792
Target:  5'- cCCCUUCAugUGU--CCGCGUCCUa- -3'
miRNA:   3'- cGGGAAGUugACGcuGGUGUAGGGgg -5'
14514 5' -55.1 NC_003521.1 + 17377 0.67 0.958372
Target:  5'- gGCCCagacUCGAgaGgGACCGC-UCCCUa -3'
miRNA:   3'- -CGGGa---AGUUgaCgCUGGUGuAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 18199 0.7 0.886742
Target:  5'- gGCCCUUCGAUcacaUGuCGGCCGCggaGUUCCgCg -3'
miRNA:   3'- -CGGGAAGUUG----AC-GCUGGUG---UAGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 18757 0.69 0.90576
Target:  5'- gGCgCCgacgggUCGcuGCUGCGACgGCuggugCCCCCc -3'
miRNA:   3'- -CG-GGa-----AGU--UGACGCUGgUGua---GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 18810 0.66 0.980662
Target:  5'- cGCCCUgccugCAgauGCUgaGCGACCGCAaCCgCg -3'
miRNA:   3'- -CGGGAa----GU---UGA--CGCUGGUGUaGGgGg -5'
14514 5' -55.1 NC_003521.1 + 19499 0.66 0.970756
Target:  5'- aGCCUUcuuccucUCAGCUGUcgcggGACUACuggCCCUCg -3'
miRNA:   3'- -CGGGA-------AGUUGACG-----CUGGUGua-GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 22365 0.7 0.858442
Target:  5'- cGCCCa-CGGCguggUGcCGGCCAUGUCCUCCg -3'
miRNA:   3'- -CGGGaaGUUG----AC-GCUGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 23932 0.68 0.941909
Target:  5'- cGCCCUccUCAcCUGCGACgACcucaucgGUCUcgCCCg -3'
miRNA:   3'- -CGGGA--AGUuGACGCUGgUG-------UAGG--GGG- -5'
14514 5' -55.1 NC_003521.1 + 25067 0.66 0.973711
Target:  5'- cGCCCUUCAGCgGCaa-CGCGUCgUCg -3'
miRNA:   3'- -CGGGAAGUUGaCGcugGUGUAGgGGg -5'
14514 5' -55.1 NC_003521.1 + 25566 0.69 0.917338
Target:  5'- cGCCCUUcCAGCUguugGCGGCCucGCucuUCaCCCUg -3'
miRNA:   3'- -CGGGAA-GUUGA----CGCUGG--UGu--AG-GGGG- -5'
14514 5' -55.1 NC_003521.1 + 26974 0.68 0.948357
Target:  5'- cGCCCUgcagCGagacugggccgaacuGCUGCGACUACA-CCgCaCCg -3'
miRNA:   3'- -CGGGAa---GU---------------UGACGCUGGUGUaGG-G-GG- -5'
14514 5' -55.1 NC_003521.1 + 27203 0.66 0.973711
Target:  5'- aUCCUgcuGCgcgGCGACCGCca-CCCCa -3'
miRNA:   3'- cGGGAaguUGa--CGCUGGUGuagGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.