Results 21 - 40 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14514 | 5' | -55.1 | NC_003521.1 | + | 222260 | 0.66 | 0.978295 |
Target: 5'- cGCUCUcCAGCUGCGcgcgcgugaugguGCC-CAgagCCCCg -3' miRNA: 3'- -CGGGAaGUUGACGC-------------UGGuGUa--GGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 180098 | 0.66 | 0.978295 |
Target: 5'- cGUCCagggagggCAGCggcguggUGCGACCcgcGCcgCCCCCg -3' miRNA: 3'- -CGGGaa------GUUG-------ACGCUGG---UGuaGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 82086 | 0.66 | 0.976204 |
Target: 5'- uGUUCUcgUAGCUGUccucgugauaGGCCACAaagacggugUCCCCCa -3' miRNA: 3'- -CGGGAa-GUUGACG----------CUGGUGU---------AGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 122137 | 0.66 | 0.976204 |
Target: 5'- uGCCCUcCAcCaGCGguACCGCcgCCuCCCg -3' miRNA: 3'- -CGGGAaGUuGaCGC--UGGUGuaGG-GGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 109831 | 0.66 | 0.976204 |
Target: 5'- cGCCCgcgUCAgGCUGgGuACCguGCucacugCCCCCa -3' miRNA: 3'- -CGGGa--AGU-UGACgC-UGG--UGua----GGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 80126 | 0.66 | 0.976204 |
Target: 5'- cGCCCUUguGuuuUUGCGGCCggugcugcGCGUCCagCCg -3' miRNA: 3'- -CGGGAAguU---GACGCUGG--------UGUAGGg-GG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 59620 | 0.66 | 0.976204 |
Target: 5'- gGCCC--CGGCgGCGACCGCggCUCgCa -3' miRNA: 3'- -CGGGaaGUUGaCGCUGGUGuaGGGgG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 136586 | 0.66 | 0.976204 |
Target: 5'- gGCCUg-CAGCUcGCGcagcuCCACGUCCUCg -3' miRNA: 3'- -CGGGaaGUUGA-CGCu----GGUGUAGGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 184837 | 0.66 | 0.976204 |
Target: 5'- uCCCgcuacUCGcgccGCUGCGACUGCcgaCCCCa -3' miRNA: 3'- cGGGa----AGU----UGACGCUGGUGuagGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 234436 | 0.66 | 0.975962 |
Target: 5'- cGCCgCggUAGCUGCGGcgccccuCCGCGaCCCCg -3' miRNA: 3'- -CGG-GaaGUUGACGCU-------GGUGUaGGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 162334 | 0.66 | 0.975962 |
Target: 5'- aCCCgcaggcggCGACUGCGggcguggGCgCGCAgCCCCCc -3' miRNA: 3'- cGGGaa------GUUGACGC-------UG-GUGUaGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 168976 | 0.66 | 0.97473 |
Target: 5'- uGCCCUgcuUCAucuuuaagaacaccgGCUGCG-CCGucUCCCUCu -3' miRNA: 3'- -CGGGA---AGU---------------UGACGCuGGUguAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 103576 | 0.66 | 0.973711 |
Target: 5'- cGCCCgcgCAgaaGCUGCGcACgUAC-UCCUCCa -3' miRNA: 3'- -CGGGaa-GU---UGACGC-UG-GUGuAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 98610 | 0.66 | 0.973711 |
Target: 5'- uUCUUUCGGCuucUGCcGCCACGUCgCUCCu -3' miRNA: 3'- cGGGAAGUUG---ACGcUGGUGUAG-GGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 102972 | 0.66 | 0.973711 |
Target: 5'- uUCCUcagUAGCUGgGACgACGUCCCg- -3' miRNA: 3'- cGGGAa--GUUGACgCUGgUGUAGGGgg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 42494 | 0.66 | 0.973711 |
Target: 5'- gGCCCgUCAcagguuuaGCcGCC-CAUCCCCCa -3' miRNA: 3'- -CGGGaAGUuga-----CGcUGGuGUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 132688 | 0.66 | 0.973711 |
Target: 5'- cGCCCcgcugauccUCAACaacGUGACCGUAgCCCCCa -3' miRNA: 3'- -CGGGa--------AGUUGa--CGCUGGUGUaGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 25067 | 0.66 | 0.973711 |
Target: 5'- cGCCCUUCAGCgGCaa-CGCGUCgUCg -3' miRNA: 3'- -CGGGAAGUUGaCGcugGUGUAGgGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 33133 | 0.66 | 0.973711 |
Target: 5'- cGCCUUUCcGCguaggGCucGCCGuCAUCUCCCu -3' miRNA: 3'- -CGGGAAGuUGa----CGc-UGGU-GUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 11766 | 0.66 | 0.973711 |
Target: 5'- cGCCCUggggacggcUCAucuGCUGCGAgga-GUCCCUCg -3' miRNA: 3'- -CGGGA---------AGU---UGACGCUggugUAGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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