miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 222260 0.66 0.978295
Target:  5'- cGCUCUcCAGCUGCGcgcgcgugaugguGCC-CAgagCCCCg -3'
miRNA:   3'- -CGGGAaGUUGACGC-------------UGGuGUa--GGGGg -5'
14514 5' -55.1 NC_003521.1 + 180098 0.66 0.978295
Target:  5'- cGUCCagggagggCAGCggcguggUGCGACCcgcGCcgCCCCCg -3'
miRNA:   3'- -CGGGaa------GUUG-------ACGCUGG---UGuaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 82086 0.66 0.976204
Target:  5'- uGUUCUcgUAGCUGUccucgugauaGGCCACAaagacggugUCCCCCa -3'
miRNA:   3'- -CGGGAa-GUUGACG----------CUGGUGU---------AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 122137 0.66 0.976204
Target:  5'- uGCCCUcCAcCaGCGguACCGCcgCCuCCCg -3'
miRNA:   3'- -CGGGAaGUuGaCGC--UGGUGuaGG-GGG- -5'
14514 5' -55.1 NC_003521.1 + 109831 0.66 0.976204
Target:  5'- cGCCCgcgUCAgGCUGgGuACCguGCucacugCCCCCa -3'
miRNA:   3'- -CGGGa--AGU-UGACgC-UGG--UGua----GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 80126 0.66 0.976204
Target:  5'- cGCCCUUguGuuuUUGCGGCCggugcugcGCGUCCagCCg -3'
miRNA:   3'- -CGGGAAguU---GACGCUGG--------UGUAGGg-GG- -5'
14514 5' -55.1 NC_003521.1 + 59620 0.66 0.976204
Target:  5'- gGCCC--CGGCgGCGACCGCggCUCgCa -3'
miRNA:   3'- -CGGGaaGUUGaCGCUGGUGuaGGGgG- -5'
14514 5' -55.1 NC_003521.1 + 136586 0.66 0.976204
Target:  5'- gGCCUg-CAGCUcGCGcagcuCCACGUCCUCg -3'
miRNA:   3'- -CGGGaaGUUGA-CGCu----GGUGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 184837 0.66 0.976204
Target:  5'- uCCCgcuacUCGcgccGCUGCGACUGCcgaCCCCa -3'
miRNA:   3'- cGGGa----AGU----UGACGCUGGUGuagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 234436 0.66 0.975962
Target:  5'- cGCCgCggUAGCUGCGGcgccccuCCGCGaCCCCg -3'
miRNA:   3'- -CGG-GaaGUUGACGCU-------GGUGUaGGGGg -5'
14514 5' -55.1 NC_003521.1 + 162334 0.66 0.975962
Target:  5'- aCCCgcaggcggCGACUGCGggcguggGCgCGCAgCCCCCc -3'
miRNA:   3'- cGGGaa------GUUGACGC-------UG-GUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 168976 0.66 0.97473
Target:  5'- uGCCCUgcuUCAucuuuaagaacaccgGCUGCG-CCGucUCCCUCu -3'
miRNA:   3'- -CGGGA---AGU---------------UGACGCuGGUguAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 103576 0.66 0.973711
Target:  5'- cGCCCgcgCAgaaGCUGCGcACgUAC-UCCUCCa -3'
miRNA:   3'- -CGGGaa-GU---UGACGC-UG-GUGuAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 98610 0.66 0.973711
Target:  5'- uUCUUUCGGCuucUGCcGCCACGUCgCUCCu -3'
miRNA:   3'- cGGGAAGUUG---ACGcUGGUGUAG-GGGG- -5'
14514 5' -55.1 NC_003521.1 + 102972 0.66 0.973711
Target:  5'- uUCCUcagUAGCUGgGACgACGUCCCg- -3'
miRNA:   3'- cGGGAa--GUUGACgCUGgUGUAGGGgg -5'
14514 5' -55.1 NC_003521.1 + 42494 0.66 0.973711
Target:  5'- gGCCCgUCAcagguuuaGCcGCC-CAUCCCCCa -3'
miRNA:   3'- -CGGGaAGUuga-----CGcUGGuGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 132688 0.66 0.973711
Target:  5'- cGCCCcgcugauccUCAACaacGUGACCGUAgCCCCCa -3'
miRNA:   3'- -CGGGa--------AGUUGa--CGCUGGUGUaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 25067 0.66 0.973711
Target:  5'- cGCCCUUCAGCgGCaa-CGCGUCgUCg -3'
miRNA:   3'- -CGGGAAGUUGaCGcugGUGUAGgGGg -5'
14514 5' -55.1 NC_003521.1 + 33133 0.66 0.973711
Target:  5'- cGCCUUUCcGCguaggGCucGCCGuCAUCUCCCu -3'
miRNA:   3'- -CGGGAAGuUGa----CGc-UGGU-GUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 11766 0.66 0.973711
Target:  5'- cGCCCUggggacggcUCAucuGCUGCGAgga-GUCCCUCg -3'
miRNA:   3'- -CGGGA---------AGU---UGACGCUggugUAGGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.