miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 74128 0.67 0.904889
Target:  5'- gGGCGCCGUGcagGACgaCGUGgCGCGCc- -3'
miRNA:   3'- gUCGUGGUACa--CUGg-GCAC-GCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 206097 0.67 0.904889
Target:  5'- uCGGUACCcgGUG-UUCGUggacGCGCACGGc -3'
miRNA:   3'- -GUCGUGGuaCACuGGGCA----CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 86351 0.67 0.904889
Target:  5'- cCGGCGCCGgcggugccgGUGACCaacaGCGUGCGGa -3'
miRNA:   3'- -GUCGUGGUa--------CACUGGgca-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 17495 0.67 0.91022
Target:  5'- gCGGCGCCGccgGUcacggcgguucccGGCCCGgcgGCGCGgGAu -3'
miRNA:   3'- -GUCGUGGUa--CA-------------CUGGGCa--CGCGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 87268 0.67 0.914243
Target:  5'- -uGCGCCGUGcgcguggccaacgGGCCCGagGUGCGCGu -3'
miRNA:   3'- guCGUGGUACa------------CUGGGCa-CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 19171 0.67 0.916493
Target:  5'- aCGGCGCUG-GUGGCCgacGUGCACGAg -3'
miRNA:   3'- -GUCGUGGUaCACUGGgcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 122047 0.67 0.916493
Target:  5'- gCAGCGagAUGcagGGCgaCGUGCGCACGGc -3'
miRNA:   3'- -GUCGUggUACa--CUGg-GCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 61503 0.67 0.916493
Target:  5'- gGGCACCc---GAacgaCGUGCGCGCGAa -3'
miRNA:   3'- gUCGUGGuacaCUgg--GCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 53365 0.67 0.916493
Target:  5'- gCAGCACCGUcccgcUGACgCG-GCGCACc- -3'
miRNA:   3'- -GUCGUGGUAc----ACUGgGCaCGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 105930 0.67 0.916493
Target:  5'- aCGGuCugCGUGUGGCCgGcGCGgAUGAu -3'
miRNA:   3'- -GUC-GugGUACACUGGgCaCGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 54530 0.67 0.918707
Target:  5'- aCGGCGCCGcUGgGGCCCGgcggcuuuuugacguUGCGCuuGAc -3'
miRNA:   3'- -GUCGUGGU-ACaCUGGGC---------------ACGCGugCU- -5'
14516 3' -56.9 NC_003521.1 + 50328 0.66 0.921961
Target:  5'- aGGCAgCggGUccucGGCCCGUuuGCGCugGAu -3'
miRNA:   3'- gUCGUgGuaCA----CUGGGCA--CGCGugCU- -5'
14516 3' -56.9 NC_003521.1 + 73099 0.66 0.921961
Target:  5'- gCAGCGCCAcgcaauccaccGUGGCCacggagGUGCuGCACGGc -3'
miRNA:   3'- -GUCGUGGUa----------CACUGGg-----CACG-CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 34141 0.66 0.921961
Target:  5'- gCAGgGCCA---GGCCCacGCGCACGAa -3'
miRNA:   3'- -GUCgUGGUacaCUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 214577 0.66 0.921961
Target:  5'- gCAGCGCUGgc-GuuCCGUGCGCgACGAg -3'
miRNA:   3'- -GUCGUGGUacaCugGGCACGCG-UGCU- -5'
14516 3' -56.9 NC_003521.1 + 118743 0.66 0.927206
Target:  5'- gGGCugCAgguugcugGUGAgucggcggCCGUGCGCACGu -3'
miRNA:   3'- gUCGugGUa-------CACUg-------GGCACGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 205755 0.66 0.927206
Target:  5'- gAGCGCCcgGaggaaGACCUGUGUgguggcgccGCACGGc -3'
miRNA:   3'- gUCGUGGuaCa----CUGGGCACG---------CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 139380 0.66 0.927206
Target:  5'- gAGCGCCGUGcucuUGGCCCcgcgGUGguCGAu -3'
miRNA:   3'- gUCGUGGUAC----ACUGGGca--CGCguGCU- -5'
14516 3' -56.9 NC_003521.1 + 102853 0.66 0.927206
Target:  5'- gGGCGCcCGUGgcguaggucUGGgCCGUGCGUAgCGAg -3'
miRNA:   3'- gUCGUG-GUAC---------ACUgGGCACGCGU-GCU- -5'
14516 3' -56.9 NC_003521.1 + 225130 0.66 0.932227
Target:  5'- aCAGCACCuggucgacGUGguugcgGACCCaGUcGCGCACc- -3'
miRNA:   3'- -GUCGUGG--------UACa-----CUGGG-CA-CGCGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.