miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 151058 0.73 0.590531
Target:  5'- aAGCGCCGUc---CCUGUGCGCGCGGg -3'
miRNA:   3'- gUCGUGGUAcacuGGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 152189 0.7 0.790457
Target:  5'- -uGCGCCucgcugggcUGUGACCCGgacgaggucacgGCGCACGu -3'
miRNA:   3'- guCGUGGu--------ACACUGGGCa-----------CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 152738 0.66 0.9416
Target:  5'- --uCGCCGaGUGGCCCGUG-GuCACGGg -3'
miRNA:   3'- gucGUGGUaCACUGGGCACgC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 153546 0.7 0.75515
Target:  5'- -cGCACCucg-GGCCCGUuggccacGCGCACGGc -3'
miRNA:   3'- guCGUGGuacaCUGGGCA-------CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 155271 0.67 0.898758
Target:  5'- gCGGCGCCuca-GGCCCGU-CGCugGGc -3'
miRNA:   3'- -GUCGUGGuacaCUGGGCAcGCGugCU- -5'
14516 3' -56.9 NC_003521.1 + 155619 0.68 0.864921
Target:  5'- gCGGCGCCggGUGACgCaGUGuCGUACGc -3'
miRNA:   3'- -GUCGUGGuaCACUGgG-CAC-GCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 162409 0.7 0.783365
Target:  5'- uCGGUACC-UGUGAuCCCGUGgGCGaggcCGAc -3'
miRNA:   3'- -GUCGUGGuACACU-GGGCACgCGU----GCU- -5'
14516 3' -56.9 NC_003521.1 + 162727 0.7 0.765286
Target:  5'- gGGCugCGUgGUGGucgacauguacCCCGUGUGCAUGGc -3'
miRNA:   3'- gUCGugGUA-CACU-----------GGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 166289 0.69 0.84223
Target:  5'- gCGGCugguCCGcGUGGCCuCGuUGCGUACGGc -3'
miRNA:   3'- -GUCGu---GGUaCACUGG-GC-ACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 166673 0.67 0.898758
Target:  5'- gCGGCACC-UG-GGcCCCGUGgCGCGCc- -3'
miRNA:   3'- -GUCGUGGuACaCU-GGGCAC-GCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 167710 0.66 0.940703
Target:  5'- gCAGCACCuccGUGGCCaCGguggauugcgugGCGCuGCGGu -3'
miRNA:   3'- -GUCGUGGua-CACUGG-GCa-----------CGCG-UGCU- -5'
14516 3' -56.9 NC_003521.1 + 169534 0.66 0.932227
Target:  5'- uGGUGCCccaggGGCCCGUGC-CGCGGc -3'
miRNA:   3'- gUCGUGGuaca-CUGGGCACGcGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 172088 0.69 0.80951
Target:  5'- gCGGCGgCGUGaUGAagUCCGUGCGgGCGGc -3'
miRNA:   3'- -GUCGUgGUAC-ACU--GGGCACGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 179522 0.66 0.9416
Target:  5'- aCGGuCugCAUGUccuugGACagGUGCGCGCGGc -3'
miRNA:   3'- -GUC-GugGUACA-----CUGggCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 194276 0.68 0.857546
Target:  5'- uCAGCACCcgGcgcgaGGCCCugGUGCGcCugGAg -3'
miRNA:   3'- -GUCGUGGuaCa----CUGGG--CACGC-GugCU- -5'
14516 3' -56.9 NC_003521.1 + 194794 0.67 0.904889
Target:  5'- -uGcCGCCAUGUGGCCCuucacgGUGCuGCugGc -3'
miRNA:   3'- guC-GUGGUACACUGGG------CACG-CGugCu -5'
14516 3' -56.9 NC_003521.1 + 198694 0.66 0.937025
Target:  5'- cCGGCACguUGaaagucUGACCgCGUuugacGCGCGCGGg -3'
miRNA:   3'- -GUCGUGguAC------ACUGG-GCA-----CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 200478 0.67 0.89241
Target:  5'- gCAGCGCCGUGauccUGGCCaaacuGgcgGCGCGCa- -3'
miRNA:   3'- -GUCGUGGUAC----ACUGGg----Ca--CGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 203357 0.81 0.250492
Target:  5'- gCGGCACCAcgGUGGCCC--GCGCGCGAg -3'
miRNA:   3'- -GUCGUGGUa-CACUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 204001 0.69 0.84223
Target:  5'- gCAGCGCCGgcccGUGGCgCGUGauCACGGc -3'
miRNA:   3'- -GUCGUGGUa---CACUGgGCACgcGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.