miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 139380 0.66 0.927206
Target:  5'- gAGCGCCGUGcucuUGGCCCcgcgGUGguCGAu -3'
miRNA:   3'- gUCGUGGUAC----ACUGGGca--CGCguGCU- -5'
14516 3' -56.9 NC_003521.1 + 129591 0.7 0.783365
Target:  5'- gGGCGCgAcuUGUGACCCGUGuCGCcCa- -3'
miRNA:   3'- gUCGUGgU--ACACUGGGCAC-GCGuGcu -5'
14516 3' -56.9 NC_003521.1 + 129100 0.68 0.879077
Target:  5'- aGGCugUggGUGGCgugCCG-GCGCACGGa -3'
miRNA:   3'- gUCGugGuaCACUG---GGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 126357 0.7 0.792217
Target:  5'- aCAGCAgCAUGUccaccucgaacGugUCgGUGCGCACGGc -3'
miRNA:   3'- -GUCGUgGUACA-----------CugGG-CACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 125859 0.73 0.620148
Target:  5'- aCAGCGCCuugGUGGCcgcguCCGUGuCGUACGGg -3'
miRNA:   3'- -GUCGUGGua-CACUG-----GGCAC-GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 124911 0.69 0.8262
Target:  5'- aCAGCACg--G-GGCCCGUGUucaGCACGGu -3'
miRNA:   3'- -GUCGUGguaCaCUGGGCACG---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 123717 0.69 0.834301
Target:  5'- -cGCACgAUGUGAcauCCCG-GaCGCGCGGg -3'
miRNA:   3'- guCGUGgUACACU---GGGCaC-GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 123583 0.67 0.898758
Target:  5'- gCAGCGCCGcGUGAUgCGUGCccuugcgucGCAgGGg -3'
miRNA:   3'- -GUCGUGGUaCACUGgGCACG---------CGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 122047 0.67 0.916493
Target:  5'- gCAGCGagAUGcagGGCgaCGUGCGCACGGc -3'
miRNA:   3'- -GUCGUggUACa--CUGg-GCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 119545 0.69 0.8262
Target:  5'- gCAGCACCAccucGGCgCCGUGCGUAUa- -3'
miRNA:   3'- -GUCGUGGUaca-CUG-GGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 118743 0.66 0.927206
Target:  5'- gGGCugCAgguugcugGUGAgucggcggCCGUGCGCACGu -3'
miRNA:   3'- gUCGugGUa-------CACUg-------GGCACGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 115558 0.68 0.849214
Target:  5'- gAGCGCCGUGcugcgcggacguUGAucucgccCCCGUGCGCGuCGu -3'
miRNA:   3'- gUCGUGGUAC------------ACU-------GGGCACGCGU-GCu -5'
14516 3' -56.9 NC_003521.1 + 105930 0.67 0.916493
Target:  5'- aCGGuCugCGUGUGGCCgGcGCGgAUGAu -3'
miRNA:   3'- -GUC-GugGUACACUGGgCaCGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 103149 0.73 0.580706
Target:  5'- gCAGCACCAggcgGAUCuCGUcGCGCACGGc -3'
miRNA:   3'- -GUCGUGGUaca-CUGG-GCA-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 102853 0.66 0.927206
Target:  5'- gGGCGCcCGUGgcguaggucUGGgCCGUGCGUAgCGAg -3'
miRNA:   3'- gUCGUG-GUAC---------ACUgGGCACGCGU-GCU- -5'
14516 3' -56.9 NC_003521.1 + 102027 0.66 0.932227
Target:  5'- gAGCACC-UG-GGCCaCG-GCGCGCa- -3'
miRNA:   3'- gUCGUGGuACaCUGG-GCaCGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 100968 0.72 0.679415
Target:  5'- aAGCGCCGU---GCCCGgcGCGCACGGc -3'
miRNA:   3'- gUCGUGGUAcacUGGGCa-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 99659 0.68 0.864921
Target:  5'- gAGCACaCGUaggccaUGGCCCG-GUGCACGGg -3'
miRNA:   3'- gUCGUG-GUAc-----ACUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 97336 0.67 0.898758
Target:  5'- uUAGCACCGUcucgcUGugCU-UGCGCGCGAu -3'
miRNA:   3'- -GUCGUGGUAc----ACugGGcACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 92225 0.68 0.84998
Target:  5'- gAGCGCUGUGagGGCCCGacggGCGCcgcGCGGu -3'
miRNA:   3'- gUCGUGGUACa-CUGGGCa---CGCG---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.