miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 220508 0.68 0.885848
Target:  5'- gCAGCAgCGUgGUGGCCUccugGUGCuGCAUGGc -3'
miRNA:   3'- -GUCGUgGUA-CACUGGG----CACG-CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 99659 0.68 0.864921
Target:  5'- gAGCACaCGUaggccaUGGCCCG-GUGCACGGg -3'
miRNA:   3'- gUCGUG-GUAc-----ACUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 64968 0.68 0.857546
Target:  5'- aAGCugCcgGUGACCU---CGCACGAc -3'
miRNA:   3'- gUCGugGuaCACUGGGcacGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 55953 0.68 0.857546
Target:  5'- gAGCACCGUGUGcagccccaccACgCCGaUGUGCAgGGg -3'
miRNA:   3'- gUCGUGGUACAC----------UG-GGC-ACGCGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 166289 0.69 0.84223
Target:  5'- gCGGCugguCCGcGUGGCCuCGuUGCGUACGGc -3'
miRNA:   3'- -GUCGu---GGUaCACUGG-GC-ACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 88260 0.69 0.84223
Target:  5'- gCGGCGCCAgcuUGACCgaGUGCuggcugucguGCACGAa -3'
miRNA:   3'- -GUCGUGGUac-ACUGGg-CACG----------CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 123717 0.69 0.834301
Target:  5'- -cGCACgAUGUGAcauCCCG-GaCGCGCGGg -3'
miRNA:   3'- guCGUGgUACACU---GGGCaC-GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 124911 0.69 0.8262
Target:  5'- aCAGCACg--G-GGCCCGUGUucaGCACGGu -3'
miRNA:   3'- -GUCGUGguaCaCUGGGCACG---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 119545 0.69 0.8262
Target:  5'- gCAGCACCAccucGGCgCCGUGCGUAUa- -3'
miRNA:   3'- -GUCGUGGUaca-CUG-GGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 208870 0.71 0.727867
Target:  5'- aCGGCACCAUGUG-CCUGUuccuggaccccGaggaGCGCGAg -3'
miRNA:   3'- -GUCGUGGUACACuGGGCA-----------Cg---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 162727 0.7 0.765286
Target:  5'- gGGCugCGUgGUGGucgacauguacCCCGUGUGCAUGGc -3'
miRNA:   3'- gUCGugGUA-CACU-----------GGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 4812 0.7 0.783365
Target:  5'- -uGCAUCAUGUuugucggauGACCCGUGCGaaCGCGc -3'
miRNA:   3'- guCGUGGUACA---------CUGGGCACGC--GUGCu -5'
14516 3' -56.9 NC_003521.1 + 129591 0.7 0.783365
Target:  5'- gGGCGCgAcuUGUGACCCGUGuCGCcCa- -3'
miRNA:   3'- gUCGUGgU--ACACUGGGCAC-GCGuGcu -5'
14516 3' -56.9 NC_003521.1 + 17667 0.71 0.718298
Target:  5'- gGGCACCAcgGUGGCCC-UGCGUAaccCGGc -3'
miRNA:   3'- gUCGUGGUa-CACUGGGcACGCGU---GCU- -5'
14516 3' -56.9 NC_003521.1 + 74557 0.71 0.698961
Target:  5'- -cGCGCCGUGcGcguGCCCGUGaGCACGGc -3'
miRNA:   3'- guCGUGGUACaC---UGGGCACgCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 23395 0.72 0.679415
Target:  5'- gAGCACCGUGUu-CCUGUGCuGCACc- -3'
miRNA:   3'- gUCGUGGUACAcuGGGCACG-CGUGcu -5'
14516 3' -56.9 NC_003521.1 + 86811 0.73 0.620148
Target:  5'- -uGCACCAggugcUGcgGACCCGUGCGUGCu- -3'
miRNA:   3'- guCGUGGU-----ACa-CUGGGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 151058 0.73 0.590531
Target:  5'- aAGCGCCGUc---CCUGUGCGCGCGGg -3'
miRNA:   3'- gUCGUGGUAcacuGGGCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 103149 0.73 0.580706
Target:  5'- gCAGCACCAggcgGAUCuCGUcGCGCACGGc -3'
miRNA:   3'- -GUCGUGGUaca-CUGG-GCA-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 87984 0.66 0.945954
Target:  5'- gAGgACUcgGUGaAUCUGgggGCGCGCGAc -3'
miRNA:   3'- gUCgUGGuaCAC-UGGGCa--CGCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.