miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 212063 0.69 0.800935
Target:  5'- gCAGCGCUAgggcgGUGGCgCGgcccGCGCGCGu -3'
miRNA:   3'- -GUCGUGGUa----CACUGgGCa---CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 152738 0.66 0.9416
Target:  5'- --uCGCCGaGUGGCCCGUG-GuCACGGg -3'
miRNA:   3'- gucGUGGUaCACUGGGCACgC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 200478 0.67 0.89241
Target:  5'- gCAGCGCCGUGauccUGGCCaaacuGgcgGCGCGCa- -3'
miRNA:   3'- -GUCGUGGUAC----ACUGGg----Ca--CGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 212639 0.66 0.932227
Target:  5'- gGGCgacuugGCCAUGcGACCCGaagaggGCGuCGCGGg -3'
miRNA:   3'- gUCG------UGGUACaCUGGGCa-----CGC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 205755 0.66 0.927206
Target:  5'- gAGCGCCcgGaggaaGACCUGUGUgguggcgccGCACGGc -3'
miRNA:   3'- gUCGUGGuaCa----CUGGGCACG---------CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 87268 0.67 0.914243
Target:  5'- -uGCGCCGUGcgcguggccaacgGGCCCGagGUGCGCGu -3'
miRNA:   3'- guCGUGGUACa------------CUGGGCa-CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 179522 0.66 0.9416
Target:  5'- aCGGuCugCAUGUccuugGACagGUGCGCGCGGc -3'
miRNA:   3'- -GUC-GugGUACA-----CUGggCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 19171 0.67 0.916493
Target:  5'- aCGGCGCUG-GUGGCCgacGUGCACGAg -3'
miRNA:   3'- -GUCGUGGUaCACUGGgcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 148443 0.72 0.68921
Target:  5'- gCGGCuCCAgggGUGGCCgGUGCGUGCuGAu -3'
miRNA:   3'- -GUCGuGGUa--CACUGGgCACGCGUG-CU- -5'
14516 3' -56.9 NC_003521.1 + 215954 0.66 0.945954
Target:  5'- -cGCACCAUGagGACCUGcUGCGa--GAg -3'
miRNA:   3'- guCGUGGUACa-CUGGGC-ACGCgugCU- -5'
14516 3' -56.9 NC_003521.1 + 74128 0.67 0.904889
Target:  5'- gGGCGCCGUGcagGACgaCGUGgCGCGCc- -3'
miRNA:   3'- gUCGUGGUACa--CUGg-GCAC-GCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 17495 0.67 0.91022
Target:  5'- gCGGCGCCGccgGUcacggcgguucccGGCCCGgcgGCGCGgGAu -3'
miRNA:   3'- -GUCGUGGUa--CA-------------CUGGGCa--CGCGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 33672 0.67 0.904889
Target:  5'- cCAGCgACCGgccGUGGCCCGcacguaacgcUGCaGCugGAc -3'
miRNA:   3'- -GUCG-UGGUa--CACUGGGC----------ACG-CGugCU- -5'
14516 3' -56.9 NC_003521.1 + 226823 0.67 0.904889
Target:  5'- aCAGCGCCAUGggguccucGCCCGccgccGCGC-CGGg -3'
miRNA:   3'- -GUCGUGGUACac------UGGGCa----CGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 123583 0.67 0.898758
Target:  5'- gCAGCGCCGcGUGAUgCGUGCccuugcgucGCAgGGg -3'
miRNA:   3'- -GUCGUGGUaCACUGgGCACG---------CGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 74183 0.67 0.89241
Target:  5'- -uGCGCCGcGgcGCCCG-GCGCGCGGc -3'
miRNA:   3'- guCGUGGUaCacUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 124911 0.69 0.8262
Target:  5'- aCAGCACg--G-GGCCCGUGUucaGCACGGu -3'
miRNA:   3'- -GUCGUGguaCaCUGGGCACG---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 119545 0.69 0.8262
Target:  5'- gCAGCACCAccucGGCgCCGUGCGUAUa- -3'
miRNA:   3'- -GUCGUGGUaca-CUG-GGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 37415 0.69 0.80951
Target:  5'- gGGCcugACCGUGUGGCgCG-GCGC-CGAg -3'
miRNA:   3'- gUCG---UGGUACACUGgGCaCGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 80123 0.66 0.945954
Target:  5'- gAGCGCCcuuGUGUuuuugcGGCCgGUGCuGCGCGu -3'
miRNA:   3'- gUCGUGG---UACA------CUGGgCACG-CGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.