miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 5' -59.7 NC_003521.1 + 68757 0.66 0.85268
Target:  5'- cGCCGUGGgGCAGuucgaggaGCCCGccGaGaCCACCg -3'
miRNA:   3'- uCGGCAUCgUGUC--------CGGGUa-C-C-GGUGG- -5'
14516 5' -59.7 NC_003521.1 + 33 0.66 0.85268
Target:  5'- uGCCGUGGC-CGGGaUCgGUGaGUCACg -3'
miRNA:   3'- uCGGCAUCGuGUCC-GGgUAC-CGGUGg -5'
14516 5' -59.7 NC_003521.1 + 174145 0.66 0.85268
Target:  5'- cGCCGacAGCACgugacgcuccaGGGCCUgcaGGCCGCg -3'
miRNA:   3'- uCGGCa-UCGUG-----------UCCGGGua-CCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 764 0.66 0.85193
Target:  5'- cGCCGgaGGCcaaGCAGGCgCCAUcggcggaGGaCCGCCc -3'
miRNA:   3'- uCGGCa-UCG---UGUCCG-GGUA-------CC-GGUGG- -5'
14516 5' -59.7 NC_003521.1 + 101018 0.66 0.85193
Target:  5'- gGGCgCGUccuGGCggGCAcGCCCGUgcagcuccauggcGGCCGCCg -3'
miRNA:   3'- -UCG-GCA---UCG--UGUcCGGGUA-------------CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 77971 0.66 0.85193
Target:  5'- gAGCCGgc-CGCGGGCUCGccguucugcacgaUGGUCGCg -3'
miRNA:   3'- -UCGGCaucGUGUCCGGGU-------------ACCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 125974 0.66 0.85193
Target:  5'- cAGCaccaGUucGCACAccgccuucuguccGuGCaCCGUGGCCGCCg -3'
miRNA:   3'- -UCGg---CAu-CGUGU-------------C-CG-GGUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 200991 0.66 0.85193
Target:  5'- cGCCGgaGGCcaaGCAGGCgCCAUcggcggaGGaCCGCCc -3'
miRNA:   3'- uCGGCa-UCG---UGUCCG-GGUA-------CC-GGUGG- -5'
14516 5' -59.7 NC_003521.1 + 27076 0.66 0.848152
Target:  5'- gAGCCcagGUAGCGCAGGCagugCA-GGCUcucgacggcgcgcagGCCg -3'
miRNA:   3'- -UCGG---CAUCGUGUCCGg---GUaCCGG---------------UGG- -5'
14516 5' -59.7 NC_003521.1 + 86755 0.66 0.848152
Target:  5'- aGGCUG-GGCACcgagAGGCgcgagagcuugaucuCCAUGGgCACCa -3'
miRNA:   3'- -UCGGCaUCGUG----UCCG---------------GGUACCgGUGG- -5'
14516 5' -59.7 NC_003521.1 + 235540 0.66 0.845097
Target:  5'- uGCCGgguuucgAGCACgucAGGCCCcuGUGGUacaacaACCc -3'
miRNA:   3'- uCGGCa------UCGUG---UCCGGG--UACCGg-----UGG- -5'
14516 5' -59.7 NC_003521.1 + 18489 0.66 0.845097
Target:  5'- cGCC-UGGaggaGCu-GCCCGUGuGCCACCa -3'
miRNA:   3'- uCGGcAUCg---UGucCGGGUAC-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 155266 0.66 0.845097
Target:  5'- cGGCgGcGGCGCcucAGGCCCGUcgcugGGCaaCGCCa -3'
miRNA:   3'- -UCGgCaUCGUG---UCCGGGUA-----CCG--GUGG- -5'
14516 5' -59.7 NC_003521.1 + 22193 0.66 0.845097
Target:  5'- cGGCCGUGGcCGCuuaccGCCgCGcgcUGGCgGCCg -3'
miRNA:   3'- -UCGGCAUC-GUGuc---CGG-GU---ACCGgUGG- -5'
14516 5' -59.7 NC_003521.1 + 101783 0.66 0.845097
Target:  5'- cGCCGUuuuggAGCGCAGGUgCAgagaaacugGGCCuuCu -3'
miRNA:   3'- uCGGCA-----UCGUGUCCGgGUa--------CCGGugG- -5'
14516 5' -59.7 NC_003521.1 + 149049 0.66 0.845097
Target:  5'- aGGCCGUGcccGCGCuGGGCUucgaCGcGGCCGCg -3'
miRNA:   3'- -UCGGCAU---CGUG-UCCGG----GUaCCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 50264 0.66 0.845097
Target:  5'- cGCCGUacugccgcugcAGC-CGGGUCCGccgcUGcuGCCGCCg -3'
miRNA:   3'- uCGGCA-----------UCGuGUCCGGGU----AC--CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 65720 0.66 0.845097
Target:  5'- cGCCGcGGC---GGCCC-UGGCCGgCa -3'
miRNA:   3'- uCGGCaUCGuguCCGGGuACCGGUgG- -5'
14516 5' -59.7 NC_003521.1 + 127405 0.66 0.845097
Target:  5'- aGGCgGUGGUcguGCAGcGCguucaCGUaGGCCGCCa -3'
miRNA:   3'- -UCGgCAUCG---UGUC-CGg----GUA-CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 195943 0.66 0.845097
Target:  5'- uAGCCGUccugcgugGGcCACAGGCUC-UGGCaGCg -3'
miRNA:   3'- -UCGGCA--------UC-GUGUCCGGGuACCGgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.