miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1452 5' -54.6 NC_001335.1 + 11916 0.66 0.745415
Target:  5'- cGUCGuAGa-CGguGAGGUCGGCGUUGGa -3'
miRNA:   3'- -UAGU-UCggGCuuCUCUAGCCGCAGCU- -5'
1452 5' -54.6 NC_001335.1 + 40932 0.66 0.745414
Target:  5'- uUUGAuGCCCGAcaacGGGAUCGGCuuGUCGc -3'
miRNA:   3'- uAGUU-CGGGCUu---CUCUAGCCG--CAGCu -5'
1452 5' -54.6 NC_001335.1 + 5955 0.66 0.713282
Target:  5'- -cCAGGCCCGAGcGGGUCGGgcuggccugugcCGUgGAc -3'
miRNA:   3'- uaGUUCGGGCUUcUCUAGCC------------GCAgCU- -5'
1452 5' -54.6 NC_001335.1 + 40897 0.66 0.702391
Target:  5'- gGUCAAGaaCCGAGGGGGgaagUCGGaccCGUCGGg -3'
miRNA:   3'- -UAGUUCg-GGCUUCUCU----AGCC---GCAGCU- -5'
1452 5' -54.6 NC_001335.1 + 3714 0.67 0.658242
Target:  5'- ----cGUUCGAuGAGGUCGGUGUCGu -3'
miRNA:   3'- uaguuCGGGCUuCUCUAGCCGCAGCu -5'
1452 5' -54.6 NC_001335.1 + 8518 0.67 0.647115
Target:  5'- --uGAGCgCCGGccAGAGGccaUCGGCGUCa- -3'
miRNA:   3'- uagUUCG-GGCU--UCUCU---AGCCGCAGcu -5'
1452 5' -54.6 NC_001335.1 + 36352 0.68 0.584833
Target:  5'- cGUCAAGCCUGAgcuuguuccgaugucGGAGGcCGGUucucgGUCGAc -3'
miRNA:   3'- -UAGUUCGGGCU---------------UCUCUaGCCG-----CAGCU- -5'
1452 5' -54.6 NC_001335.1 + 12597 0.69 0.525932
Target:  5'- --uGAGCCCGAAGuGAU-GGCGcugaUCGAg -3'
miRNA:   3'- uagUUCGGGCUUCuCUAgCCGC----AGCU- -5'
1452 5' -54.6 NC_001335.1 + 20750 0.7 0.504666
Target:  5'- cUCGAGCCCG--GAGAUCGGgagCGAg -3'
miRNA:   3'- uAGUUCGGGCuuCUCUAGCCgcaGCU- -5'
1452 5' -54.6 NC_001335.1 + 17896 0.71 0.443314
Target:  5'- -gCGAGaauCCCGGAGGGGUCGGUGccCGAc -3'
miRNA:   3'- uaGUUC---GGGCUUCUCUAGCCGCa-GCU- -5'
1452 5' -54.6 NC_001335.1 + 28211 0.72 0.399237
Target:  5'- -aCGAGCuuGGAacccuggagggcaacGAGAUCGGCGUCu- -3'
miRNA:   3'- uaGUUCGggCUU---------------CUCUAGCCGCAGcu -5'
1452 5' -54.6 NC_001335.1 + 29665 0.75 0.266578
Target:  5'- --gGGGCuuGAGGAGAUgGGCGUCa- -3'
miRNA:   3'- uagUUCGggCUUCUCUAgCCGCAGcu -5'
1452 5' -54.6 NC_001335.1 + 9855 0.78 0.15432
Target:  5'- cGUgGGGCUCGggGAGccugggaccgucggGUCGGCGUCGAc -3'
miRNA:   3'- -UAgUUCGGGCuuCUC--------------UAGCCGCAGCU- -5'
1452 5' -54.6 NC_001335.1 + 9186 1.07 0.001544
Target:  5'- cAUCAAGCCCGAAGAGAUCGGCGUCGAc -3'
miRNA:   3'- -UAGUUCGGGCUUCUCUAGCCGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.