Results 101 - 120 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14520 | 5' | -60.3 | NC_003521.1 | + | 196467 | 0.78 | 0.231977 |
Target: 5'- --gUGGGCCgcagccCCAGCGCGUCGCGGAUg -3' miRNA: 3'- cauGCCUGGa-----GGUCGUGCGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 196633 | 0.66 | 0.837866 |
Target: 5'- -aGCGGACUUUCucuGCGCuCuCGCGGAg -3' miRNA: 3'- caUGCCUGGAGGu--CGUGcG-GCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 196862 | 0.68 | 0.677052 |
Target: 5'- -cACGuccACCUCCAGCaACGgcaCCGCGGGUg -3' miRNA: 3'- caUGCc--UGGAGGUCG-UGC---GGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 198270 | 0.69 | 0.657689 |
Target: 5'- --cCGGACagCCAGCcggGCGUCGCGGAg -3' miRNA: 3'- cauGCCUGgaGGUCG---UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 200337 | 0.66 | 0.813732 |
Target: 5'- --uCGGGCCggCGGguCGUCGCGGGg -3' miRNA: 3'- cauGCCUGGagGUCguGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 200338 | 0.74 | 0.384244 |
Target: 5'- cUGCGGcGCCgu-GGCGCGCCGCGGAc -3' miRNA: 3'- cAUGCC-UGGaggUCGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 200412 | 0.66 | 0.788259 |
Target: 5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3' miRNA: 3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 201598 | 0.66 | 0.827584 |
Target: 5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3' miRNA: 3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 207899 | 0.66 | 0.788258 |
Target: 5'- --uUGGGCuCUCCGGCcgccaccuACGCCGgGGGc -3' miRNA: 3'- cauGCCUG-GAGGUCG--------UGCGGCgCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 210592 | 0.68 | 0.721921 |
Target: 5'- -cGCGGACCUgCAGCGCgacgccaacggccgGCCGaucuCGGAg -3' miRNA: 3'- caUGCCUGGAgGUCGUG--------------CGGC----GCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 211661 | 0.72 | 0.458592 |
Target: 5'- gGUAcCGGGCCUuuGGCGgagaaguUGCCGCGGAg -3' miRNA: 3'- -CAU-GCCUGGAggUCGU-------GCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 211703 | 0.74 | 0.361044 |
Target: 5'- ---aGGGCCUCCAGCuugcCGCCGUGGc- -3' miRNA: 3'- caugCCUGGAGGUCGu---GCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 215423 | 0.67 | 0.752554 |
Target: 5'- -gGCGaGcCCUCCgugaAGCAgaGCCGCGGGUg -3' miRNA: 3'- caUGC-CuGGAGG----UCGUg-CGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 216549 | 0.67 | 0.734095 |
Target: 5'- -gAUGGACCugccgagggaaUCCAGguCGCCGCcGAUa -3' miRNA: 3'- caUGCCUGG-----------AGGUCguGCGGCGcCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 218610 | 0.75 | 0.346129 |
Target: 5'- gGUACGGuucgGCCgCCAGCGCGCgGCGGu- -3' miRNA: 3'- -CAUGCC----UGGaGGUCGUGCGgCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 221899 | 0.67 | 0.77063 |
Target: 5'- -gGCGGAUUgCCGGCGCGCgGCGc-- -3' miRNA: 3'- caUGCCUGGaGGUCGUGCGgCGCcua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 226468 | 0.68 | 0.715317 |
Target: 5'- --gUGGGCCaCCAGCACcagguacugGUCGCGGGUg -3' miRNA: 3'- cauGCCUGGaGGUCGUG---------CGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 226870 | 0.68 | 0.705827 |
Target: 5'- ---aGGGCgUCCAGCGagggcaGCUGCGGGg -3' miRNA: 3'- caugCCUGgAGGUCGUg-----CGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 232837 | 0.71 | 0.551319 |
Target: 5'- --cCGGuACCUCCcccGC-CGCCGCGGAc -3' miRNA: 3'- cauGCC-UGGAGGu--CGuGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 240658 | 0.66 | 0.813732 |
Target: 5'- --uCGGGCCggCGGguCGUCGCGGGg -3' miRNA: 3'- cauGCCUGGagGUCguGCGGCGCCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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