Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14520 | 5' | -60.3 | NC_003521.1 | + | 124033 | 0.67 | 0.743368 |
Target: 5'- -cGCGG-CCguagacggCCAGCGUGCCGCGGc- -3' miRNA: 3'- caUGCCuGGa-------GGUCGUGCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 119352 | 0.69 | 0.657689 |
Target: 5'- gGUcCGG-CCUCCauGGaCACGCCGgGGAUg -3' miRNA: 3'- -CAuGCCuGGAGG--UC-GUGCGGCgCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 117068 | 0.66 | 0.837866 |
Target: 5'- -cGCGGAgCCggCGGuCACGCCGUGcGAUa -3' miRNA: 3'- caUGCCU-GGagGUC-GUGCGGCGC-CUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 116593 | 0.66 | 0.837866 |
Target: 5'- -cGCGGcCCUCCcuGCAaguCGCUGCGGc- -3' miRNA: 3'- caUGCCuGGAGGu-CGU---GCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 115785 | 0.66 | 0.796887 |
Target: 5'- -cACGGACCa-CAcGCGCGgauacCCGCGGAUg -3' miRNA: 3'- caUGCCUGGagGU-CGUGC-----GGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 115413 | 0.74 | 0.368668 |
Target: 5'- -cACGG-CCUCCGGacucaGCGCCGCGGc- -3' miRNA: 3'- caUGCCuGGAGGUCg----UGCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 114924 | 0.69 | 0.667383 |
Target: 5'- cGgcCGGGCCUCguGCAUGCugggCGUGGAc -3' miRNA: 3'- -CauGCCUGGAGguCGUGCG----GCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 114719 | 0.72 | 0.46831 |
Target: 5'- -gACGaGAUCgaccgcuggaUCCGGCACGCCGUGGGg -3' miRNA: 3'- caUGC-CUGG----------AGGUCGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 111803 | 0.66 | 0.829982 |
Target: 5'- cUGCGGGugcCCUCUGGCgGCGCCaGCGaGAUc -3' miRNA: 3'- cAUGCCU---GGAGGUCG-UGCGG-CGC-CUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 111272 | 0.67 | 0.752554 |
Target: 5'- cGU-CGGGCCcgccgugCCAGCGcCGCCGCGa-- -3' miRNA: 3'- -CAuGCCUGGa------GGUCGU-GCGGCGCcua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 111173 | 0.73 | 0.40025 |
Target: 5'- -cGCGGccGCC-CCGGCgacgGCGCCGCGGAc -3' miRNA: 3'- caUGCC--UGGaGGUCG----UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 107445 | 0.66 | 0.796887 |
Target: 5'- -cGCGGACCgCC-GCGCuguGCCgGCGGAc -3' miRNA: 3'- caUGCCUGGaGGuCGUG---CGG-CGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 104679 | 0.67 | 0.752554 |
Target: 5'- -cGCGGAgCUCgAGgGgGCCGUGGGc -3' miRNA: 3'- caUGCCUgGAGgUCgUgCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 103467 | 0.67 | 0.779503 |
Target: 5'- -cGCGGAUgcgggagggcggCUCCAGCGgGCCcGCGuGAUa -3' miRNA: 3'- caUGCCUG------------GAGGUCGUgCGG-CGC-CUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 103140 | 0.66 | 0.813732 |
Target: 5'- -gGCGGugCUgCAGCAC-CagGCGGAUc -3' miRNA: 3'- caUGCCugGAgGUCGUGcGg-CGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 95919 | 0.69 | 0.647976 |
Target: 5'- --uCGG-CCaCCGGCAUGCCGUGGGc -3' miRNA: 3'- cauGCCuGGaGGUCGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 95832 | 0.66 | 0.821121 |
Target: 5'- -cGCGaGGCCUCgguGGCAUGCCGCuggcucaGGAUg -3' miRNA: 3'- caUGC-CUGGAGg--UCGUGCGGCG-------CCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 91792 | 0.67 | 0.770629 |
Target: 5'- -cACGG-CCUCgAGaaucucCACGCCGUGGGg -3' miRNA: 3'- caUGCCuGGAGgUC------GUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 91522 | 0.67 | 0.76525 |
Target: 5'- -gGCGGccgcgucgucGCgCUCCAGCACGUacuugugggcgccgaCGCGGAa -3' miRNA: 3'- caUGCC----------UG-GAGGUCGUGCG---------------GCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 91195 | 0.68 | 0.677052 |
Target: 5'- -aGCGGuACCgCgGGCGCGUCGUGGGc -3' miRNA: 3'- caUGCC-UGGaGgUCGUGCGGCGCCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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