Results 101 - 120 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14520 | 5' | -60.3 | NC_003521.1 | + | 55126 | 0.73 | 0.442066 |
Target: 5'- -cGCGGACCUCaaauaaGGuCGCGgCGCGGAg -3' miRNA: 3'- caUGCCUGGAGg-----UC-GUGCgGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 48610 | 0.69 | 0.638252 |
Target: 5'- cGUGC--ACCgUCAGCACGCaCGCGGAUa -3' miRNA: 3'- -CAUGccUGGaGGUCGUGCG-GCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 43470 | 0.69 | 0.657689 |
Target: 5'- -aGCGGGCCagcgcggcggCCGuGCugGCCGCGGc- -3' miRNA: 3'- caUGCCUGGa---------GGU-CGugCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 42622 | 0.7 | 0.558942 |
Target: 5'- gGUACGGGCCgcugggaacacgUCAGCA-GCCGCGGu- -3' miRNA: 3'- -CAUGCCUGGa-----------GGUCGUgCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 35806 | 0.68 | 0.723803 |
Target: 5'- --uCGGGCgUCgCGGCACGCCgucguuaGCGGGUc -3' miRNA: 3'- cauGCCUGgAG-GUCGUGCGG-------CGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 35056 | 0.68 | 0.715316 |
Target: 5'- gGUugGuACUUCCAGCGgGCCauGCGGGa -3' miRNA: 3'- -CAugCcUGGAGGUCGUgCGG--CGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 34759 | 0.69 | 0.63728 |
Target: 5'- cGUACGaGACCacgCCGaugagguGCAUGUCGCGGAa -3' miRNA: 3'- -CAUGC-CUGGa--GGU-------CGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 33125 | 0.78 | 0.226668 |
Target: 5'- -aGCGGGCCuucUCCAGCACGCCGauGAc -3' miRNA: 3'- caUGCCUGG---AGGUCGUGCGGCgcCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 30681 | 0.66 | 0.821122 |
Target: 5'- -cGCGauGACCUCaugaGGCuuauaacaacgcgGCGCCGCGGGc -3' miRNA: 3'- caUGC--CUGGAGg---UCG-------------UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 29239 | 0.71 | 0.551319 |
Target: 5'- cUACuGGGCCUCCAGC-CGCgGCGa-- -3' miRNA: 3'- cAUG-CCUGGAGGUCGuGCGgCGCcua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 28311 | 0.67 | 0.779504 |
Target: 5'- -aGCGGcagcgACC-CCGGCGCgGCCuGCGGAc -3' miRNA: 3'- caUGCC-----UGGaGGUCGUG-CGG-CGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 28005 | 0.83 | 0.110863 |
Target: 5'- -aGCGGcaccucgcuguccuCCUCCAGCACGCCGCGGGg -3' miRNA: 3'- caUGCCu-------------GGAGGUCGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 24889 | 0.66 | 0.813732 |
Target: 5'- gGUGCGcuACCUCac-CAUGCCGCGGGa -3' miRNA: 3'- -CAUGCc-UGGAGgucGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 23970 | 0.69 | 0.618798 |
Target: 5'- -cACGGGCCUggaaCAGUcgucCGCCGCGGGc -3' miRNA: 3'- caUGCCUGGAg---GUCGu---GCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 18659 | 0.67 | 0.778621 |
Target: 5'- -cACGGACCUgCUGGCcacggggGCGCUGCaGGAc -3' miRNA: 3'- caUGCCUGGA-GGUCG-------UGCGGCG-CCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 13978 | 0.71 | 0.541835 |
Target: 5'- -gAUGGGCCUgcCCGGCGCGgCgGCGGGc -3' miRNA: 3'- caUGCCUGGA--GGUCGUGC-GgCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 10540 | 0.66 | 0.79603 |
Target: 5'- aGUAUGGACUgCUAGUggugcugACGUCGUGGGUg -3' miRNA: 3'- -CAUGCCUGGaGGUCG-------UGCGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 7453 | 0.66 | 0.837866 |
Target: 5'- --cCGGAUC-CCGGCgACGCaucCGCGGAUc -3' miRNA: 3'- cauGCCUGGaGGUCG-UGCG---GCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 1371 | 0.66 | 0.827584 |
Target: 5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3' miRNA: 3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 184 | 0.66 | 0.788258 |
Target: 5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3' miRNA: 3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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