Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14520 | 5' | -60.3 | NC_003521.1 | + | 76948 | 0.74 | 0.368668 |
Target: 5'- -cGCGGugCguUCCAGCAUGUCGCGGc- -3' miRNA: 3'- caUGCCugG--AGGUCGUGCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 182175 | 0.66 | 0.821935 |
Target: 5'- -gACGGACggCCGGCGCGUgG-GGAUu -3' miRNA: 3'- caUGCCUGgaGGUCGUGCGgCgCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 192215 | 0.68 | 0.705827 |
Target: 5'- -gGCGGACCcuguuUCUuGCgacccgGCGCCGCGGGa -3' miRNA: 3'- caUGCCUGG-----AGGuCG------UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 73224 | 0.68 | 0.715317 |
Target: 5'- cUGCGGcGCCUCU-GCGCGCCGCu--- -3' miRNA: 3'- cAUGCC-UGGAGGuCGUGCGGCGccua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 65150 | 0.72 | 0.46831 |
Target: 5'- -aGCGGACCUCgCA-CGgGCCGUGGAg -3' miRNA: 3'- caUGCCUGGAG-GUcGUgCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 57433 | 0.72 | 0.477235 |
Target: 5'- -cGCGGACgggCUCCuGCACGCCgcaaaaGCGGAa -3' miRNA: 3'- caUGCCUG---GAGGuCGUGCGG------CGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 179482 | 0.72 | 0.495331 |
Target: 5'- -gACGGguACgCUCCGGCAgCGCCGgGGAa -3' miRNA: 3'- caUGCC--UG-GAGGUCGU-GCGGCgCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 82749 | 0.66 | 0.79603 |
Target: 5'- uUGCGGgacgagaucacgcGCgaCCGGCGgGCCGUGGAg -3' miRNA: 3'- cAUGCC-------------UGgaGGUCGUgCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 172535 | 0.66 | 0.796887 |
Target: 5'- -gAUGGccuCCUCCAGCACcugguggauGCUGgGGAUg -3' miRNA: 3'- caUGCCu--GGAGGUCGUG---------CGGCgCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 70732 | 0.68 | 0.705827 |
Target: 5'- uGUAcCGGcACUUCguccagcugCAGCGCGCCGCGGc- -3' miRNA: 3'- -CAU-GCC-UGGAG---------GUCGUGCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 76205 | 0.66 | 0.80538 |
Target: 5'- -gAUGGGCCagaagcccgCCGGCACGCCcUGGGc -3' miRNA: 3'- caUGCCUGGa--------GGUCGUGCGGcGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 82621 | 0.66 | 0.813732 |
Target: 5'- ---aGGAgCUCCAuaCACGCCGcCGGAg -3' miRNA: 3'- caugCCUgGAGGUc-GUGCGGC-GCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 200337 | 0.66 | 0.813732 |
Target: 5'- --uCGGGCCggCGGguCGUCGCGGGg -3' miRNA: 3'- cauGCCUGGagGUCguGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 30681 | 0.66 | 0.821122 |
Target: 5'- -cGCGauGACCUCaugaGGCuuauaacaacgcgGCGCCGCGGGc -3' miRNA: 3'- caUGC--CUGGAGg---UCG-------------UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 165641 | 0.66 | 0.821935 |
Target: 5'- -cACGGugUUgagcagCAGCACGCCGCGcGGc -3' miRNA: 3'- caUGCCugGAg-----GUCGUGCGGCGC-CUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 172754 | 0.66 | 0.821935 |
Target: 5'- uUGCgGGGCCcggcauUCUGGCugccaccggggGCGCCGCGGAc -3' miRNA: 3'- cAUG-CCUGG------AGGUCG-----------UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 201598 | 0.66 | 0.827584 |
Target: 5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3' miRNA: 3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 134482 | 0.66 | 0.829982 |
Target: 5'- aGUuuGGugCUCU-GCACGCUcugGCGGAUg -3' miRNA: 3'- -CAugCCugGAGGuCGUGCGG---CGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 116593 | 0.66 | 0.837866 |
Target: 5'- -cGCGGcCCUCCcuGCAaguCGCUGCGGc- -3' miRNA: 3'- caUGCCuGGAGGu-CGU---GCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 71005 | 0.66 | 0.80538 |
Target: 5'- cGUACGGACUgacgCUGGCugGagaCCGgCGGAg -3' miRNA: 3'- -CAUGCCUGGa---GGUCGugC---GGC-GCCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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