miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 30681 0.66 0.821122
Target:  5'- -cGCGauGACCUCaugaGGCuuauaacaacgcgGCGCCGCGGGc -3'
miRNA:   3'- caUGC--CUGGAGg---UCG-------------UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 165641 0.66 0.821935
Target:  5'- -cACGGugUUgagcagCAGCACGCCGCGcGGc -3'
miRNA:   3'- caUGCCugGAg-----GUCGUGCGGCGC-CUa -5'
14520 5' -60.3 NC_003521.1 + 182175 0.66 0.821935
Target:  5'- -gACGGACggCCGGCGCGUgG-GGAUu -3'
miRNA:   3'- caUGCCUGgaGGUCGUGCGgCgCCUA- -5'
14520 5' -60.3 NC_003521.1 + 172754 0.66 0.821935
Target:  5'- uUGCgGGGCCcggcauUCUGGCugccaccggggGCGCCGCGGAc -3'
miRNA:   3'- cAUG-CCUGG------AGGUCG-----------UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 201598 0.66 0.827584
Target:  5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 200412 0.66 0.788259
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 28311 0.67 0.779504
Target:  5'- -aGCGGcagcgACC-CCGGCGCgGCCuGCGGAc -3'
miRNA:   3'- caUGCC-----UGGaGGUCGUG-CGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 221899 0.67 0.77063
Target:  5'- -gGCGGAUUgCCGGCGCGCgGCGc-- -3'
miRNA:   3'- caUGCCUGGaGGUCGUGCGgCGCcua -5'
14520 5' -60.3 NC_003521.1 + 125886 0.67 0.740596
Target:  5'- cGUACGGGuCCacgcCCAGCAUGCacgaggcccggccgCGCGGGUu -3'
miRNA:   3'- -CAUGCCU-GGa---GGUCGUGCG--------------GCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 87575 0.67 0.743369
Target:  5'- -gACGGGCaggCgGGUGCGCaCGCGGAc -3'
miRNA:   3'- caUGCCUGga-GgUCGUGCG-GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 144900 0.67 0.743369
Target:  5'- cUGCGGGCC-CaCGGCAUGCCgGUGGc- -3'
miRNA:   3'- cAUGCCUGGaG-GUCGUGCGG-CGCCua -5'
14520 5' -60.3 NC_003521.1 + 61832 0.67 0.752554
Target:  5'- -gAgGGGCC-CUgggAGgGCGCCGCGGAa -3'
miRNA:   3'- caUgCCUGGaGG---UCgUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 104679 0.67 0.752554
Target:  5'- -cGCGGAgCUCgAGgGgGCCGUGGGc -3'
miRNA:   3'- caUGCCUgGAGgUCgUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 136698 0.67 0.752554
Target:  5'- -gGCGGGCC-CgAGCaggACGCCGCcgaGGAUg -3'
miRNA:   3'- caUGCCUGGaGgUCG---UGCGGCG---CCUA- -5'
14520 5' -60.3 NC_003521.1 + 215423 0.67 0.752554
Target:  5'- -gGCGaGcCCUCCgugaAGCAgaGCCGCGGGUg -3'
miRNA:   3'- caUGC-CuGGAGG----UCGUg-CGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 162366 0.67 0.752554
Target:  5'- --cCGGGCCgcguucCCAGcCGCGCCGaagaGGAUg -3'
miRNA:   3'- cauGCCUGGa-----GGUC-GUGCGGCg---CCUA- -5'
14520 5' -60.3 NC_003521.1 + 127282 0.67 0.761644
Target:  5'- -cGCGGcACgUCCGaCACGCCGUGGu- -3'
miRNA:   3'- caUGCC-UGgAGGUcGUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 150486 0.67 0.769736
Target:  5'- gGUGgGGcCCUUCAGCuuuuacgGCGCCgGCGGGg -3'
miRNA:   3'- -CAUgCCuGGAGGUCG-------UGCGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 135917 0.67 0.77063
Target:  5'- uGUGCcGGCCUCgGcCACgGCCGCGGGa -3'
miRNA:   3'- -CAUGcCUGGAGgUcGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 143918 0.67 0.77063
Target:  5'- -gACGGGCa--CGGCGCGCCGCa--- -3'
miRNA:   3'- caUGCCUGgagGUCGUGCGGCGccua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.