miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 43470 0.69 0.657689
Target:  5'- -aGCGGGCCagcgcggcggCCGuGCugGCCGCGGc- -3'
miRNA:   3'- caUGCCUGGa---------GGU-CGugCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 65150 0.72 0.46831
Target:  5'- -aGCGGACCUCgCA-CGgGCCGUGGAg -3'
miRNA:   3'- caUGCCUGGAG-GUcGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 57433 0.72 0.477235
Target:  5'- -cGCGGACgggCUCCuGCACGCCgcaaaaGCGGAa -3'
miRNA:   3'- caUGCCUG---GAGGuCGUGCGG------CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 179482 0.72 0.495331
Target:  5'- -gACGGguACgCUCCGGCAgCGCCGgGGAa -3'
miRNA:   3'- caUGCC--UG-GAGGUCGU-GCGGCgCCUa -5'
14520 5' -60.3 NC_003521.1 + 29239 0.71 0.551319
Target:  5'- cUACuGGGCCUCCAGC-CGCgGCGa-- -3'
miRNA:   3'- cAUG-CCUGGAGGUCGuGCGgCGCcua -5'
14520 5' -60.3 NC_003521.1 + 232837 0.71 0.551319
Target:  5'- --cCGGuACCUCCcccGC-CGCCGCGGAc -3'
miRNA:   3'- cauGCC-UGGAGGu--CGuGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 34759 0.69 0.63728
Target:  5'- cGUACGaGACCacgCCGaugagguGCAUGUCGCGGAa -3'
miRNA:   3'- -CAUGC-CUGGa--GGU-------CGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 48610 0.69 0.638252
Target:  5'- cGUGC--ACCgUCAGCACGCaCGCGGAUa -3'
miRNA:   3'- -CAUGccUGGaGGUCGUGCG-GCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 169440 0.69 0.647976
Target:  5'- -gGCGGuCCUCgaaCAGCGgguCGCCGUGGAc -3'
miRNA:   3'- caUGCCuGGAG---GUCGU---GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 211661 0.72 0.458592
Target:  5'- gGUAcCGGGCCUuuGGCGgagaaguUGCCGCGGAg -3'
miRNA:   3'- -CAU-GCCUGGAggUCGU-------GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 82707 0.73 0.442066
Target:  5'- aUGCGGGCCaagUCCAGCaacgaggcuGCGuuGCGGGUc -3'
miRNA:   3'- cAUGCCUGG---AGGUCG---------UGCggCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 55126 0.73 0.442066
Target:  5'- -cGCGGACCUCaaauaaGGuCGCGgCGCGGAg -3'
miRNA:   3'- caUGCCUGGAGg-----UC-GUGCgGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 28005 0.83 0.110863
Target:  5'- -aGCGGcaccucgcuguccuCCUCCAGCACGCCGCGGGg -3'
miRNA:   3'- caUGCCu-------------GGAGGUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 33125 0.78 0.226668
Target:  5'- -aGCGGGCCuucUCCAGCACGCCGauGAc -3'
miRNA:   3'- caUGCCUGG---AGGUCGUGCGGCgcCUa -5'
14520 5' -60.3 NC_003521.1 + 133966 0.76 0.284562
Target:  5'- cGUACGGGCgUCCAugcgcggacGCugGCCGCGGc- -3'
miRNA:   3'- -CAUGCCUGgAGGU---------CGugCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 218610 0.75 0.346129
Target:  5'- gGUACGGuucgGCCgCCAGCGCGCgGCGGu- -3'
miRNA:   3'- -CAUGCC----UGGaGGUCGUGCGgCGCCua -5'
14520 5' -60.3 NC_003521.1 + 211703 0.74 0.361044
Target:  5'- ---aGGGCCUCCAGCuugcCGCCGUGGc- -3'
miRNA:   3'- caugCCUGGAGGUCGu---GCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 76948 0.74 0.368668
Target:  5'- -cGCGGugCguUCCAGCAUGUCGCGGc- -3'
miRNA:   3'- caUGCCugG--AGGUCGUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 115413 0.74 0.368668
Target:  5'- -cACGG-CCUCCGGacucaGCGCCGCGGc- -3'
miRNA:   3'- caUGCCuGGAGGUCg----UGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 111173 0.73 0.40025
Target:  5'- -cGCGGccGCC-CCGGCgacgGCGCCGCGGAc -3'
miRNA:   3'- caUGCC--UGGaGGUCG----UGCGGCGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.